Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1482 ATGGCACCGCGTCTAAAAGGCCTGCAGCTTACCCAGGTGCCCGCCGCTGGCCGGAAACCGAAATCAGTTCTCGTCGGAGACATTTCCGATGATCTCGAGGATGTGGGTCTCCTCGATTATAAGTCGTATGGCGAGGACGAGGAGAATTCGGGCAGAATTGAAGAGGGTATGAGGAAGGTTCAAGTTGGAGTCTCTGGTATGACCTGTGCTGCTTGCTCTAACTCTGTTGAGGGAGCTCTTATGAGCATTAATGGCGTTTTGAGAGCCTCTGTAGCTTTGCTTCAGAACAGAGCTGATGTGGTTTTTGATCCGAATTTGGTCAAGAACGAAGATATCAAGAATGCAATTGAAGATGCTGGGTTTGAAGCTGAGATTCTTCCAGAACCTAGCACTTTTGGAACAAAGCCAAATGGAACTCTAATGGGACAATTTACAATAGGAGGTATGACATGTGCAGCCTGTGTGAACTCCGTCGAAGGCATTTTGAGAGATCTTCCAGGTGTCAAAAGGGCAGTGGTTGCCTTGGCTACTTCATTAGGAGAGGTTGAGTATGATCCTTCTGTAATTAGTAAAGATGAAATAGTCAATGCAATTGAAGATGCTGGGTTTGAAGCTTCACTGGTACAGAGCAGTGAACAGGACAAGATTGTTCTTGGGGTTGGTGGAATATTCAGCGAGATTGATGCCCAATTTTTGGAGGGGATACTTGTGAGCTTGAAAGGAGTGAGAAAATTCTGCTTTGACCAGGATTCAAGAGAACTAGAAGTTCTCTTTGACCCTGAAGTTATCAGTTCTAGATCTTTGGTGGATGAGATAGAGGCAAGAAGCAATGGGAAGTATAAATTACACGTTGTGAGCCCATATTTGAGAATGACTTCGAAAGATGCTGGAGAAGCCACAAATACGTTTCGCTTATTCAGCTCAAGTTTGTTTCTCAGTGTCCTGGTCTTTCTCGTCCGGGTAGTTTGCCCTCACATTCCTCTGATATATTCACTATTACTCTGGCGATGTGGGCCCTTCCTTATGGATGATTGGTTGAAGTGGGCATTGACAAGTATTGTCCAATTTGTGATTGGGAAACGGTTCTATGTTGCAGCGGCAAGAGCTCTTCGAAACAGATCAACTAACATGGATGTTTTGGTTGCTTTGGGTACTTCGGCCTCTTACTTCTACTCTGTTTGTGCACTTCTTTATGGTGCAGTTACCGGGTTTTGGTCCCCCACATACTTTGAAACAAGTGCCATGCTCATAACGTTTGTCTTATTGGGGAAGTACTTGGAGTGTCTTGCAAAGGGAAAAACATCAGATGCCATCAAGAACTTAGTAAAGCTCTCCCCTGCCACAGCATTGTTGCTTGTAAAAAATAAAGGTGGGGATTGGATAGAAGAAAGAGAAATAGACTCTCTACTAATTCAGCCTGGTGACACTTTGAAAGTTGTTCCTGGTGCAAAGGTTCCAGCTGATGGCGTGGTTGTTTGGGGTTCAAGTTATGTAAATGAAAGTATGGTTACAGGTGAAGCTATACCTATTCTTAAGGAGGTCGATTCACCAGTTATTGGAGGTACTATTAATTTGCACGGTGCTCTCCATATACAAGCTACCAAAGTAGGATCTGATACAGTTTTGAGCCAGATCATAAGTTTGGTTGAGACAGCACAGATGTCTAAAGCCCCTATTCAGAAATTTGCTGATTTTGTAGCTAGCATATTTGTTCCAACAGTTGTTGTTTTGGCAATATTGACATTATTGGGCTGGTATATTGGTGGAACACTTGGAGCTTACCCAGAAAGTTGGCTGCCTGCAAATGGAAATTACTTTGTTTTTTCTCTAATGTTTTCAATATCGGTTGTGGTAATTGCCTGCCCCTGTGCACTTGGTCTGGCCACTCCAACCGCTGTCATGGTTGCGACTGGAGTTGGGGCTAATAATGGTGTGTTGATCAAAGGAGGAGATGCTTTGGAAAGGGCTCAGAAGATTAAGCACGTGATCTTTGATAAAACAGGGACCCTTACGCAGGGAAAAGCCACTGTAACAATCGCCAAAGTTTTCAACAAGATGGAACGTGCAGAATTCCTTAAGTTGGTAGCTTCTGCAGAGGCTAGCAGCGAACACCCATTGGCAAAAGCAATAGTGGAATATGCACGCCATTTTCAGTTCTTTGAAGACCCTGCTTCAGCTGAGAACTCTCAAAATCACAGCAAACAGTTGTCCGGATGGCTTTTTGACGTATCAAAATTCACTGCCGTGCCTGGAAGAGGGGTCCAATGCATTATAGATGGAAAAAAACTTCTGGTTGGAAATAGGAAGCTGATGACTGAAAATGGAATCAGCATAGAACCTCATGTGGAAAATTTTGTTGTAGAGCTGGAAGAAGGTGCCAAGACAGGCATACTTGTTGCATTTGACGATAACTTGATTGGTGTTTTAGGAGTTGCGGACCCACTTAAGAGAGAAGCAGCTGTGGTCATAGAGGGCCTTGGGAAAATGGGAGTTATTCCAGTCATGGTTACAGGGGATAATTGGAGGACAGCCCGTGCTGTTGCCAGGGAGGTTGGTATCAAAGATGTGAGGGCAGAAGTGATGCCAGCTGGCAAAGCCGAAGTCGTCCGATCCTTCCAAAAGGACAGAAACGTAGTGGCGATGGTAGGTGATGGAATCAACGACTCACCCGCTCTAGCCGCTGCGGACGTAGGAATGGCGATCGGGGCAGGGACAGATGTCGCTATCGAAGCGGCCGACTACGTTTTGATGAGAAACAATCTCGAAGATGTAATCATAGCCATTGATCTCTCGAGAAAGACCTTTACTCGGATCCGGTTAAATTACGTTTTTGCCATGGCCTACAATGTGATTGCCATTCCTGTAGCTGCCGGAGCTTTTTATCCTTGGCTGGGTTTGAAATTGCCGCCATGGGCTGCTGGGGCATGCATGGCTTTATCGTCTGTAAGTGTTGTATGCTCCTCTTTGCTTCTTAGGAGATACAAAAAACCAAGACTTACCACTATACTAGAAATAACTGTAGAGTAG 3027 44.8 MAPRLKGLQLTQVPAAGRKPKSVLVGDISDDLEDVGLLDYKSYGEDEENSGRIEEGMRKVQVGVSGMTCAACSNSVEGALMSINGVLRASVALLQNRADVVFDPNLVKNEDIKNAIEDAGFEAEILPEPSTFGTKPNGTLMGQFTIGGMTCAACVNSVEGILRDLPGVKRAVVALATSLGEVEYDPSVISKDEIVNAIEDAGFEASLVQSSEQDKIVLGVGGIFSEIDAQFLEGILVSLKGVRKFCFDQDSRELEVLFDPEVISSRSLVDEIEARSNGKYKLHVVSPYLRMTSKDAGEATNTFRLFSSSLFLSVLVFLVRVVCPHIPLIYSLLLWRCGPFLMDDWLKWALTSIVQFVIGKRFYVAAARALRNRSTNMDVLVALGTSASYFYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKNLVKLSPATALLLVKNKGGDWIEEREIDSLLIQPGDTLKVVPGAKVPADGVVVWGSSYVNESMVTGEAIPILKEVDSPVIGGTINLHGALHIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADFVASIFVPTVVVLAILTLLGWYIGGTLGAYPESWLPANGNYFVFSLMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKHVIFDKTGTLTQGKATVTIAKVFNKMERAEFLKLVASAEASSEHPLAKAIVEYARHFQFFEDPASAENSQNHSKQLSGWLFDVSKFTAVPGRGVQCIIDGKKLLVGNRKLMTENGISIEPHVENFVVELEEGAKTGILVAFDDNLIGVLGVADPLKREAAVVIEGLGKMGVIPVMVTGDNWRTARAVAREVGIKDVRAEVMPAGKAEVVRSFQKDRNVVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAADYVLMRNNLEDVIIAIDLSRKTFTRIRLNYVFAMAYNVIAIPVAAGAFYPWLGLKLPPWAAGACMALSSVSVVCSSLLLRRYKKPRLTTILEITVE 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9924778 9932401 - Conep05aG0152900.1 Cone5ag1482 438500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1482 1008 ProSitePatterns Heavy-metal-associated domain. 146 175 IPR017969 GO:0046872(InterPro)
Cone5ag1482 1008 SFLD p-type atpase 645 934 IPR044492 -
Cone5ag1482 1008 PRINTS H+-transporting ATPase (proton pump) signature 854 870 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone5ag1482 1008 PRINTS H+-transporting ATPase (proton pump) signature 882 898 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone5ag1482 1008 PRINTS H+-transporting ATPase (proton pump) signature 913 938 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone5ag1482 1008 Gene3D - 57 128 - -
Cone5ag1482 1008 FunFam Copper-exporting P-type ATPase 762 813 - -
Cone5ag1482 1008 SUPERFAMILY Calcium ATPase, transduction domain A 463 549 IPR008250 -
Cone5ag1482 1008 FunFam Copper-exporting P-type ATPase A 139 208 - -
Cone5ag1482 1008 Pfam Heavy-metal-associated domain 64 122 IPR006121 GO:0046872(InterPro)
Cone5ag1482 1008 Pfam Heavy-metal-associated domain 144 204 IPR006121 GO:0046872(InterPro)
Cone5ag1482 1008 SUPERFAMILY HMA, heavy metal-associated domain 136 211 IPR036163 GO:0046872(InterPro)
Cone5ag1482 1008 CDD HMA 143 206 IPR006121 GO:0046872(InterPro)
Cone5ag1482 1008 CDD P-type_ATPase_Cu-like 304 978 - -
Cone5ag1482 1008 SUPERFAMILY HMA, heavy metal-associated domain 211 274 IPR036163 GO:0046872(InterPro)
Cone5ag1482 1008 ProSitePatterns Heavy-metal-associated domain. 64 94 IPR017969 GO:0046872(InterPro)
Cone5ag1482 1008 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 45 1005 - -
Cone5ag1482 1008 FunFam Copper-transporting ATPase RAN1 670 761 - -
Cone5ag1482 1008 Gene3D - 654 932 IPR023214 -
Cone5ag1482 1008 Gene3D - 674 815 IPR023299 GO:0000166(InterPro)
Cone5ag1482 1008 Pfam haloacid dehalogenase-like hydrolase 659 896 - -
Cone5ag1482 1008 SUPERFAMILY HAD-like 662 988 IPR036412 -
Cone5ag1482 1008 PRINTS P-type cation-transporting ATPase superfamily signature 663 677 - -
Cone5ag1482 1008 PRINTS P-type cation-transporting ATPase superfamily signature 499 513 - -
Cone5ag1482 1008 PRINTS P-type cation-transporting ATPase superfamily signature 882 901 - -
Cone5ag1482 1008 PRINTS P-type cation-transporting ATPase superfamily signature 829 839 - -
Cone5ag1482 1008 PRINTS P-type cation-transporting ATPase superfamily signature 807 818 - -
Cone5ag1482 1008 PRINTS P-type cation-transporting ATPase superfamily signature 905 917 - -
Cone5ag1482 1008 SFLD C1.7: P-type atpase like 645 934 - -
Cone5ag1482 1008 FunFam Probable copper-transporting ATPase HMA5 785 939 - -
Cone5ag1482 1008 SUPERFAMILY Calcium ATPase, transmembrane domain M 399 971 IPR023298 -
Cone5ag1482 1008 ProSitePatterns E1-E2 ATPases phosphorylation site. 665 671 IPR018303 -
Cone5ag1482 1008 Gene3D - 431 553 - -
Cone5ag1482 1008 FunFam Copper-transporting ATPase 1, putative 431 553 - -
Cone5ag1482 1008 SUPERFAMILY HMA, heavy metal-associated domain 54 128 IPR036163 GO:0046872(InterPro)
Cone5ag1482 1008 ProSiteProfiles Heavy-metal-associated domain profile. 140 206 IPR006121 GO:0046872(InterPro)
Cone5ag1482 1008 ProSiteProfiles Heavy-metal-associated domain profile. 58 124 IPR006121 GO:0046872(InterPro)
Cone5ag1482 1008 Gene3D - 142 208 - -
Cone5ag1482 1008 FunFam Copper-exporting P-type ATPase A 56 126 - -
Cone5ag1482 1008 NCBIfam heavy metal translocating P-type ATPase 377 991 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cone5ag1482 1008 NCBIfam copper ion binding protein 59 123 IPR006122 GO:0005507(InterPro)
Cone5ag1482 1008 NCBIfam copper ion binding protein 143 205 IPR006122 GO:0005507(InterPro)
Cone5ag1482 1008 NCBIfam HAD-IC family P-type ATPase 741 961 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone5ag1482 1008 NCBIfam HAD-IC family P-type ATPase 416 715 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone5ag1482 1008 CDD HMA 64 124 IPR006121 GO:0046872(InterPro)
Cone5ag1482 1008 Pfam E1-E2 ATPase 444 642 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0309 Cone-Chr16:3628541 Cone5ag1482 Cone-Chr5:9924778 1.80E-67 dispersed
Cone5ag1482 Cone-Chr5:9924778 Cone9ag0775 Cone-Chr9:3710036 8.82E-288 dispersed
Cone1ag0355 Cone-Chr1:2920289 Cone5ag1482 Cone-Chr5:9924778 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1482 K17686 - csv:101205642 1581.62