Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag1491 | ATGAGCCAGAGGTTATACAAGTATGCTGGGTGTTGGACAAGCTCAAGGCTTAGCGTGAGCGTGACCACTAAGTACTACTTCACTGTCATTGATGCTCCCGAACACATAGATTTCATCAAGAACATGATTACAGGAACATCACAGGCATATTGTGTCGTCCTCATCATCGAGTCCACCGTTGGTGATTTTGAAATCGGTATCTCCAAGGATGGTCAGACCCGTGAGCATGCCTTGCTTGCTTTCACCTTAGGCGTGAAGCAGATGATTTTCGATTGTAATAAGAGGGATGCTACCACCCCCAAATACTCAGAGGCAAGGTATGATGAAATAGTGAAGGAAGTCTCTTCATATCTGAAGAAGGTCGATAATGAGCCCAAGAGGCCCTCAAACAAGCCCCTCCGTCTCCCACTTCAGGATGTCTATAAAATCAATGGTATTGGAACTGTACCAGTGGGGTGGGTCGCAACTGGTGTTATCAAACCAGGTATGGTTGTCACTTTTGGCCCAATTGGGTTGACCACTAATGTCAAGTCTGTTGACAGGCACCATGAGGCTCTCTTAGAGGCTCTTCTCGAAGACAACGCCCAATTCATCGTCAAGAACGTTGCCGCCAAGGATCTCAGGTATGGTTTTGTTACTTCCAACTCCAAGGATGATCTGGCCAAGGAGGTCATCATCATGAAACACCCTAGTCAAATTAGAAATGGGTATGCTCCAGTGCTGGATTGCCACACCTACCACATTGCTGTCAAGTTTGCTGAGATCTTGACCAAGATCGACAGAAGGTCCAGAAAGGAGCTTGAGAAGGAACCCAAGTTCTTGAAGAATGGTGATGCAGGGATGGTTAAGAGGATTTCGACTATGCCCATGGTTGTTGAGACTTTCTCAGAGTACCCACCTCTTGGCCATTTTGTTGTTAGGGACATGGGTCAGACCGTTGTTGTGGGTGCGATAAAGAGTGTTGAAGGATCCATCTGGTGCCAAGGTCACCAACTCTTCTGCTAA | 1005 | 46.87 | MSQRLYKYAGCWTSSRLSVSVTTKYYFTVIDAPEHIDFIKNMITGTSQAYCVVLIIESTVGDFEIGISKDGQTREHALLAFTLGVKQMIFDCNKRDATTPKYSEARYDEIVKEVSSYLKKVDNEPKRPSNKPLRLPLQDVYKINGIGTVPVGWVATGVIKPGMVVTFGPIGLTTNVKSVDRHHEALLEALLEDNAQFIVKNVAAKDLRYGFVTSNSKDDLAKEVIIMKHPSQIRNGYAPVLDCHTYHIAVKFAEILTKIDRRSRKELEKEPKFLKNGDAGMVKRISTMPMVVETFSEYPPLGHFVVRDMGQTVVVGAIKSVEGSIWCQGHQLFC | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 10037004 | 10038263 | + | Conep05aG0153800.1 | Cone5ag1491 | 438509 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag1491 | 334 | Gene3D | Translation factors | 131 | 215 | - | - | |
Cone5ag1491 | 334 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 223 | 321 | IPR009001 | - | |
Cone5ag1491 | 334 | Gene3D | - | 7 | 130 | IPR027417 | - | |
Cone5ag1491 | 334 | Pfam | Elongation factor Tu GTP binding domain | 18 | 126 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cone5ag1491 | 334 | Gene3D | Translation factors | 219 | 322 | - | - | |
Cone5ag1491 | 334 | FunFam | Elongation factor 1-alpha | 216 | 322 | - | - | |
Cone5ag1491 | 334 | CDD | EF1_alpha_II | 129 | 219 | - | - | |
Cone5ag1491 | 334 | SUPERFAMILY | Translation proteins | 125 | 217 | IPR009000 | - | |
Cone5ag1491 | 334 | PANTHER | TRANSLATION FACTOR | 123 | 319 | IPR050100 | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER) | |
Cone5ag1491 | 334 | FunFam | Elongation factor 1-alpha | 128 | 215 | - | - | |
Cone5ag1491 | 334 | Pfam | GTP-eEF1A C-terminal domain-like | 223 | 319 | IPR054696 | - | |
Cone5ag1491 | 334 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 18 | 148 | IPR027417 | - | |
Cone5ag1491 | 334 | CDD | EF1_alpha_III | 223 | 318 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone5ag1491 | Cone-Chr5:10037004 | Cone7ag0397 | Cone-Chr7:1772122 | 9.90E-162 | dispersed | |
Cone5ag1490 | Cone-Chr5:10025340 | Cone5ag1491 | Cone-Chr5:10037004 | 2.45E-164 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag1491 | K03231 | - | mdm:103422071 | 456.447 |