Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1491 ATGAGCCAGAGGTTATACAAGTATGCTGGGTGTTGGACAAGCTCAAGGCTTAGCGTGAGCGTGACCACTAAGTACTACTTCACTGTCATTGATGCTCCCGAACACATAGATTTCATCAAGAACATGATTACAGGAACATCACAGGCATATTGTGTCGTCCTCATCATCGAGTCCACCGTTGGTGATTTTGAAATCGGTATCTCCAAGGATGGTCAGACCCGTGAGCATGCCTTGCTTGCTTTCACCTTAGGCGTGAAGCAGATGATTTTCGATTGTAATAAGAGGGATGCTACCACCCCCAAATACTCAGAGGCAAGGTATGATGAAATAGTGAAGGAAGTCTCTTCATATCTGAAGAAGGTCGATAATGAGCCCAAGAGGCCCTCAAACAAGCCCCTCCGTCTCCCACTTCAGGATGTCTATAAAATCAATGGTATTGGAACTGTACCAGTGGGGTGGGTCGCAACTGGTGTTATCAAACCAGGTATGGTTGTCACTTTTGGCCCAATTGGGTTGACCACTAATGTCAAGTCTGTTGACAGGCACCATGAGGCTCTCTTAGAGGCTCTTCTCGAAGACAACGCCCAATTCATCGTCAAGAACGTTGCCGCCAAGGATCTCAGGTATGGTTTTGTTACTTCCAACTCCAAGGATGATCTGGCCAAGGAGGTCATCATCATGAAACACCCTAGTCAAATTAGAAATGGGTATGCTCCAGTGCTGGATTGCCACACCTACCACATTGCTGTCAAGTTTGCTGAGATCTTGACCAAGATCGACAGAAGGTCCAGAAAGGAGCTTGAGAAGGAACCCAAGTTCTTGAAGAATGGTGATGCAGGGATGGTTAAGAGGATTTCGACTATGCCCATGGTTGTTGAGACTTTCTCAGAGTACCCACCTCTTGGCCATTTTGTTGTTAGGGACATGGGTCAGACCGTTGTTGTGGGTGCGATAAAGAGTGTTGAAGGATCCATCTGGTGCCAAGGTCACCAACTCTTCTGCTAA 1005 46.87 MSQRLYKYAGCWTSSRLSVSVTTKYYFTVIDAPEHIDFIKNMITGTSQAYCVVLIIESTVGDFEIGISKDGQTREHALLAFTLGVKQMIFDCNKRDATTPKYSEARYDEIVKEVSSYLKKVDNEPKRPSNKPLRLPLQDVYKINGIGTVPVGWVATGVIKPGMVVTFGPIGLTTNVKSVDRHHEALLEALLEDNAQFIVKNVAAKDLRYGFVTSNSKDDLAKEVIIMKHPSQIRNGYAPVLDCHTYHIAVKFAEILTKIDRRSRKELEKEPKFLKNGDAGMVKRISTMPMVVETFSEYPPLGHFVVRDMGQTVVVGAIKSVEGSIWCQGHQLFC 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10037004 10038263 + Conep05aG0153800.1 Cone5ag1491 438509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1491 334 Gene3D Translation factors 131 215 - -
Cone5ag1491 334 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 223 321 IPR009001 -
Cone5ag1491 334 Gene3D - 7 130 IPR027417 -
Cone5ag1491 334 Pfam Elongation factor Tu GTP binding domain 18 126 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone5ag1491 334 Gene3D Translation factors 219 322 - -
Cone5ag1491 334 FunFam Elongation factor 1-alpha 216 322 - -
Cone5ag1491 334 CDD EF1_alpha_II 129 219 - -
Cone5ag1491 334 SUPERFAMILY Translation proteins 125 217 IPR009000 -
Cone5ag1491 334 PANTHER TRANSLATION FACTOR 123 319 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Cone5ag1491 334 FunFam Elongation factor 1-alpha 128 215 - -
Cone5ag1491 334 Pfam GTP-eEF1A C-terminal domain-like 223 319 IPR054696 -
Cone5ag1491 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 148 IPR027417 -
Cone5ag1491 334 CDD EF1_alpha_III 223 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1491 Cone-Chr5:10037004 Cone7ag0397 Cone-Chr7:1772122 9.90E-162 dispersed
Cone5ag1490 Cone-Chr5:10025340 Cone5ag1491 Cone-Chr5:10037004 2.45E-164 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1491 K03231 - mdm:103422071 456.447