Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1503 ATGGCTAATCCTCTCAAAAAGCCAGTAGCGTTAGGCTGCCTTCTTTTATTTTCTCTCTTTGCTTCTTCTTCCGTTGCTCTTTCTGATTCAGAAGCCTCTCTAATCGCTCATCGCCAGTTAACTGCACTTAGAGAATTTGATCTACTTCCTGATAAATTTGAGTTCCAAGTCGATCTTGGAGCTCTAGCTACAGCTTTTACAAATGATAGGCTTAAGGGAGCCTACATTGCTCTTCAAGCATTGAAAAATGCCATATATTCTGACCCATTTAACAACACTGCCAATTGGGTTGGTGCTGATGTTTGTGCTTATAACGGGGTGTTTTGTTCTCCAGCTCTTGACAATGCGAAGCTCAACGTTGTTGCTGGCGTTGATCTCAATCACGCTGACATTGCTGGTCACCTTCCACCTGAGCTTGGACTTTTAACCGACATGGCCTTGTTTCATATAAACTCAAATAGGTTTTGTGGGATTGTGCCTAAGAGCATGTCAAGATGCAAACTAATGTACGAGTTTGATATTAGTAACAATCGCTTTGTTGGCCCTTTTCCGGACGTAGTCCTTACATGGCCCGGTGTTAAATACATGGACCTTAGGTTTAATGATTTTGAGGGTCCATTGCCACAAGATCTCTTCTTGAAGGAACTCGATGCATTGTTCTTGAATAACAATCGATTTACATCGACCATCCCTGATACAATCGGCAAATCGACAGTCACTGTTGTTACATTTGCATACAACAAGTTCACTGGATGCATTCCAAGAACCATTGGCAACATGCCCAACTTGAATGAGATCCTCTTCTTGGGCAATGAACTTAGAGGTTGCTTCCCGCCAGAAATTGGAAAGCTTCGAAATGTGACAGTATTTGACGCTAGTGACAATATGCTCATCGGAGGTTTACCGAGTAGTCTTTCAGGGTTGAAGAGTATTGAGGAATTAGACATCGCATTTAACAAGTTGTCAGGTTTTGTGCCAGAGGGCATTTGCAAGTTACCTAAGTTGATGAATTTTACGTTCTCTTACAACTATTTTAATATGCAAGCTAAAGCATGTGTACCATCTACTAAACTTCATGGAGAAGCATTGGCGTTGGATGATAGAAGCAATTGTTTGGACGGTAGGCCAAACCAAAAGCCTCATCATGAATGTTTACAAGTTGTGACAAAACCAGTTGATTGTAGTAAGAATTGCGGTGCCTATTCAACCCCGTCACAACCAACTACTCCTCAGCTATCTCCAGCTCCAGTTGAGAATCATCCATCACCTGCACCACCCACAATATTGTCGCCAACATCAACTCCTATTCTACCAGTTCCAACCCCTGTGCAGCCACCAACAACAACACTTGTTCAACCAGCACCGACACCATTGCTGCCACCTACTCCAATTCAAGAAGTGCCAACCCCAGTCCCGGTACAGGTATCGACTCCTAATTCCCCAATGACGACACCAATGCCTCCCCAGGTACAAGATCCCATCCCACCAGAGGCATCACCAATTCCTCCACAAGTGGCGATTCCCATTCCATCAGCTCCCGTTCCATCAGTGGATGGACCAAAACCTCCACAAGTATCAGTTCCCATTCCATCCGTGATTGAACCGATACCTCCACAAGTATCTGCTCCCGTTCCATCCATGGTTGAATCCATACCTCCACAAGTGTCGCCTCCCACTCCACCAGTGGTAGAACCAATACCTCCACAAGTGTCACCTCCCGCTCCACAAATGGCCACACCAATTCCTCCACCAGTATCGGCTCATGTTCCGTCCATACCAACACCAGCTTTACCAACTCCTAATGATTCGAATACTCAATCTCCTACACCAAGGACACATCCAAATTTACCTGCACCATCACCAAAGCCAACAGCCCCTACACCAAATAACCCCAATATTCAGTCTCCTATATCAAGGACACCACCATCAGTAGCAATCTCAACACCAAGTCCAGAACCGAGTGAGCTAACTAAACAAACTCCAACGGTACAAAATACACCACCAACACCAACACAATCACCGGAAGTAGAGGCACCAACATTTGATGACCCCAACCGTCAGTCTCCCTTGGTACCAGATACACCTCCAACAGAGCAATTAACACCACGACTTGTGGCACCAACGCCAAATGAAATGAATTCACCACCAGTGCCAGCACCAGTTGTACCACCCATTTTCGATGATCCACATCATCAATCTCCTGTGACCCCAACACACCCTGAACCGGTGCAATCACCTCCCCAAGTAGTTCATTCTCTGCCAGCACCAGTCAATTCTCCTCCATCACCACCAGCACATTCACCGCCTCCTCCACCTCCCATTCACTCCCCCCCACCCCCGATCCATTCTCCTCCACCGCCCGTTCACTCTCCCCCACCTCCTATTCAGTCTCCTCCACCAACCCCACCTCCTGTCCACTCCCCTCCACCACCGGTCCACTCTCCCCCACCTCCCACCCACTCTCCTCCCCCACCTCCTGTCCATTCTCCTCCACCGCCAGTTCAATTTTCTCCTCAACCGTTTATTCATTCTTCTCCTCCCCCAGTCAACTCTCCCCCACCACCTCCCCATTCTCCCCCTCCTCCAGTTCAGTCTCCTCCACCACCTGTGCCCTCACCTCCGCCACCAATATTCTCACCACCACCGCCCGCTCCAACTATATCTCCTCCACCTCTAGTTCGTCCACCACCACCAGTCACAGAAGAATTGATATTGCCACCAACCTTCGGGTCTCGTTATCAATCGCCCCCTCCACCCATATTCGCCGGCTACTAG 2775 47.89 MANPLKKPVALGCLLLFSLFASSSVALSDSEASLIAHRQLTALREFDLLPDKFEFQVDLGALATAFTNDRLKGAYIALQALKNAIYSDPFNNTANWVGADVCAYNGVFCSPALDNAKLNVVAGVDLNHADIAGHLPPELGLLTDMALFHINSNRFCGIVPKSMSRCKLMYEFDISNNRFVGPFPDVVLTWPGVKYMDLRFNDFEGPLPQDLFLKELDALFLNNNRFTSTIPDTIGKSTVTVVTFAYNKFTGCIPRTIGNMPNLNEILFLGNELRGCFPPEIGKLRNVTVFDASDNMLIGGLPSSLSGLKSIEELDIAFNKLSGFVPEGICKLPKLMNFTFSYNYFNMQAKACVPSTKLHGEALALDDRSNCLDGRPNQKPHHECLQVVTKPVDCSKNCGAYSTPSQPTTPQLSPAPVENHPSPAPPTILSPTSTPILPVPTPVQPPTTTLVQPAPTPLLPPTPIQEVPTPVPVQVSTPNSPMTTPMPPQVQDPIPPEASPIPPQVAIPIPSAPVPSVDGPKPPQVSVPIPSVIEPIPPQVSAPVPSMVESIPPQVSPPTPPVVEPIPPQVSPPAPQMATPIPPPVSAHVPSIPTPALPTPNDSNTQSPTPRTHPNLPAPSPKPTAPTPNNPNIQSPISRTPPSVAISTPSPEPSELTKQTPTVQNTPPTPTQSPEVEAPTFDDPNRQSPLVPDTPPTEQLTPRLVAPTPNEMNSPPVPAPVVPPIFDDPHHQSPVTPTHPEPVQSPPQVVHSLPAPVNSPPSPPAHSPPPPPPIHSPPPPIHSPPPPVHSPPPPIQSPPPTPPPVHSPPPPVHSPPPPTHSPPPPPVHSPPPPVQFSPQPFIHSSPPPVNSPPPPPHSPPPPVQSPPPPVPSPPPPIFSPPPPAPTISPPPLVRPPPPVTEELILPPTFGSRYQSPPPPIFAGY 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10171994 10175019 - Conep05aG0155000.1 Cone5ag1503 438521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1503 924 SUPERFAMILY L domain-like 75 347 - -
Cone5ag1503 924 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Cone5ag1503 924 MobiDBLite consensus disorder prediction 409 426 - -
Cone5ag1503 924 MobiDBLite consensus disorder prediction 709 727 - -
Cone5ag1503 924 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 834 IPR051582 -
Cone5ag1503 924 Gene3D Ribonuclease Inhibitor 75 235 IPR032675 -
Cone5ag1503 924 FunFam Pollen-specific leucine-rich repeat extensin-like protein 1 74 376 - -
Cone5ag1503 924 Gene3D Ribonuclease Inhibitor 236 357 IPR032675 -
Cone5ag1503 924 MobiDBLite consensus disorder prediction 401 426 - -
Cone5ag1503 924 MobiDBLite consensus disorder prediction 550 597 - -
Cone5ag1503 924 MobiDBLite consensus disorder prediction 544 924 - -
Cone5ag1503 924 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cone5ag1503 924 MobiDBLite consensus disorder prediction 612 630 - -
Cone5ag1503 924 MobiDBLite consensus disorder prediction 631 678 - -
Cone5ag1503 924 MobiDBLite consensus disorder prediction 735 903 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1503 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0166 Cone-Chr20:717390 Cone5ag1503 Cone-Chr5:10171994 6.30E-47 dispersed
Cone2ag0284 Cone-Chr2:1476204 Cone5ag1503 Cone-Chr5:10171994 1.22E-36 dispersed
Cone4ag0716 Cone-Chr4:3857442 Cone5ag1503 Cone-Chr5:10171994 7.68E-40 dispersed
Cone4ag1548 Cone-Chr4:11925894 Cone5ag1503 Cone-Chr5:10171994 1.16E-55 dispersed
Cone5ag1503 Cone-Chr5:10171994 Cone7ag0673 Cone-Chr7:3656919 4.82E-36 dispersed
Cone5ag1503 Cone-Chr5:10171994 Cone17ag1306 Cone-Chr17:9298742 4.50E-57 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0716 . 68 412 Leucine-rich Repeat extension Gene Families AT1G62440 64.0 1.8e-51 201.8
Cone4ag1835 . 48 389 Leucine-rich Repeat extension Gene Families AT1G62440 56.1 2.3e-46 184.9
Cone7ag0673 . 68 412 Leucine-rich Repeat extension Gene Families AT1G62440 62.0 3.9e-46 184.1
Cone17ag1306 . 55 392 Leucine-rich Repeat extension Gene Families AT1G62440 61.8 5.6e-45 180.3
Cone5ag1503 . 66 245 Leucine-rich Repeat extension Gene Families AT1G62440 66.7 8.4e-41 166.4
Cone4ag0264 . 39 364 Leucine-rich Repeat extension Gene Families AT1G62440 56.4 2.4e-40 164.9
Cone4ag1548 . 58 226 Leucine-rich Repeat extension Gene Families AT1G62440 69.2 1.2e-39 162.5
Cone2ag0284 . 66 236 Leucine-rich Repeat extension Gene Families AT1G62440 66.1 1.3e-38 159.1
Cone16ag0754 . 67 237 Leucine-rich Repeat extension Gene Families AT1G62440 66.7 1.3e-38 159.1
Cone7ag1740 . 3 212 Leucine-rich Repeat extension Gene Families AT1G62440 57.1 2.3e-38 158.3
Cone12ag1471 . 58 382 Leucine-rich Repeat extension Gene Families AT1G62440 52.3 3.0e-38 157.9
Cone4ag0716 . 1 413 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 1.9e-74 278.1
Cone7ag0673 . 35 413 Leucine-rich Repeat extension Gene Families AT4G13340 76.4 4.0e-72 270.4
Cone16ag0754 . 39 411 Leucine-rich Repeat extension Gene Families AT4G13340 75.1 3.1e-64 244.2
Cone2ag0284 . 38 410 Leucine-rich Repeat extension Gene Families AT4G13340 73.8 1.5e-63 241.9
Cone4ag1835 . 34 386 Leucine-rich Repeat extension Gene Families AT4G13340 65.0 1.1e-56 219.2
Cone5ag1503 . 21 266 Leucine-rich Repeat extension Gene Families AT4G13340 57.7 9.2e-45 179.5
Cone7ag1740 . 1 183 Leucine-rich Repeat extension Gene Families AT4G13340 77.0 2.3e-43 174.9
Cone17ag1306 . 18 212 Leucine-rich Repeat extension Gene Families AT4G13340 62.6 2.1e-41 168.3
Cone20ag0166 . 18 224 Leucine-rich Repeat extension Gene Families AT4G13340 65.9 2.4e-40 164.9
Cone4ag0264 . 39 367 Leucine-rich Repeat extension Gene Families AT4G13340 56.1 3.1e-40 164.5
Cone12ag1471 . 55 382 Leucine-rich Repeat extension Gene Families AT4G13340 55.9 3.8e-38 157.5
Cone4ag1548 . 13 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 1.4e-37 155.6
Cone4ag0716 . 35 417 Leucine-rich Repeat extension Gene Families AT3G24480 77.7 8.3e-87 318.5
Cone7ag0673 . 35 413 Leucine-rich Repeat extension Gene Families AT3G24480 75.7 5.8e-80 295.8
Cone16ag0754 . 31 407 Leucine-rich Repeat extension Gene Families AT3G24480 72.5 1.1e-70 265.0
Cone2ag0284 . 30 406 Leucine-rich Repeat extension Gene Families AT3G24480 71.2 2.3e-68 257.3
Cone4ag1835 . 34 386 Leucine-rich Repeat extension Gene Families AT3G24480 62.1 3.3e-59 226.9
Cone5ag1503 . 18 266 Leucine-rich Repeat extension Gene Families AT3G24480 59.2 1.5e-48 191.4
Cone4ag0264 . 25 367 Leucine-rich Repeat extension Gene Families AT3G24480 56.4 1.9e-46 184.5
Cone17ag1306 . 17 212 Leucine-rich Repeat extension Gene Families AT3G24480 64.5 4.2e-46 183.3
Cone7ag1740 . 1 183 Leucine-rich Repeat extension Gene Families AT3G24480 70.5 5.6e-43 172.9
Cone4ag1548 . 17 225 Leucine-rich Repeat extension Gene Families AT3G24480 60.3 6.9e-41 166.0
Cone20ag0166 . 17 404 Leucine-rich Repeat extension Gene Families AT3G24480 58.1 1.2e-40 165.2
Cone12ag1471 . 58 382 Leucine-rich Repeat extension Gene Families AT3G24480 53.4 2.9e-39 160.6
Cone4ag0264 . 6 364 Leucine-rich Repeat extension Gene Families AT3G22800 61.4 5.7e-61 232.6
Cone4ag1835 . 60 386 Leucine-rich Repeat extension Gene Families AT3G22800 66.2 2.2e-52 204.1
Cone12ag1471 . 57 382 Leucine-rich Repeat extension Gene Families AT3G22800 61.5 2.0e-50 197.6
Cone4ag0716 . 80 412 Leucine-rich Repeat extension Gene Families AT3G22800 62.4 9.1e-43 172.2
Cone7ag0673 . 80 412 Leucine-rich Repeat extension Gene Families AT3G22800 64.5 1.3e-41 168.3
Cone7ag1740 . 1 282 Leucine-rich Repeat extension Gene Families AT3G22800 71.0 5.0e-41 166.4
Cone2ag0284 . 78 402 Leucine-rich Repeat extension Gene Families AT3G22800 63.3 2.1e-39 161.0
Cone16ag0754 . 79 403 Leucine-rich Repeat extension Gene Families AT3G22800 63.9 2.1e-39 161.0
Cone4ag1835 . 32 386 Leucine-rich Repeat extension Gene Families AT5G25550 62.0 2.1e-54 210.7
Cone4ag0264 . 33 364 Leucine-rich Repeat extension Gene Families AT5G25550 61.4 2.0e-44 177.6
Cone2ag0284 . 52 402 Leucine-rich Repeat extension Gene Families AT5G25550 62.8 2.5e-39 160.6
Cone7ag0673 . 54 405 Leucine-rich Repeat extension Gene Families AT5G25550 60.3 4.3e-39 159.8
Cone4ag0716 . 54 405 Leucine-rich Repeat extension Gene Families AT5G25550 57.8 9.6e-39 158.7
Cone16ag0754 . 53 403 Leucine-rich Repeat extension Gene Families AT5G25550 62.5 8.2e-38 155.6
Cone12ag1471 . 58 382 Leucine-rich Repeat extension Gene Families AT5G25550 55.1 6.9e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92