Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1543 ATGAGTAATTACCCAGTGGACCTTGGGAGGCCTGTATCAGCTAAAAGAAAATTAAAAGATCTATTGCTGCAAAAAGATAACCGCACTTGTGCAGATTGTGGTGCTCCCGATCCGAAATGGGCGTCAGCAAATATTGGAGTTTTCATATGCTTAAAATGTTGTGGTGTGCACAGGAGCCTTGGCACACATATATCGAAGGTATTATCAGTGATGTTGGATGAGTGGTCTGATGAGGAAATTGATTCCATGATGGAAGTTGGAGGAAATTCTTCGGCCAATGCAATTTATGAGGCTTTTATTCCCGAAGGACATTCTAAGCCCAAACCAGATGCTAGCCATGATGAACGAACAAAGTTCATTCGGTCTAAGTATGAGCTTCAAGAGTTTTTGAAACCAAGCTTGCGCATTATGTCAACCAAATCTGGGAAAAGCTCACTCGAAGCTAGTTTGTCTAGAAAGCTTATGGATAGTTTTCGTAGCTCAAATTCTTCGCACAACTATGAGGGCATGGTAGAATTTATCGGGTTATTGAAGGTCAAAGTGGTAAAAGGCACAAATTTAGCTATCAGAGATATGATGACAAGCGATCCTTATGTTATATTGAATCTTGGGCAACAGACTGTTCAGACAACTGTAGTAAAGAGCAACTTGAACCCAGTATGGAATGAGGAACTTATGTTGTCAGTACCTCAGAATTATGGCGCCTTGAAATTGAGGGTGTTTGACTACGACACATTTTCAGCCGATGACATAATGGGAGAAGCAGAGATTGATCTCCAGCCAATGATAGCATCTGCAATGGCATTCGGAGATGCCGGAATGTTTGGAAACATGCAGATTGGGAAGTGGCTAAAATCACATGATAACGCTCTGATAAAAGATAGCACTGTGAATATTATTGATGGGAAGATGAGACAAGAGATATCATTAAAACTTCAGAATGTGGAGTGTGGAGATTACCGACTAAACAACTTTTATCTCGGAAGTGGATTCGGTCTAGCATTGGGCTGTAGACCGATCCCAACCATAATTTGTAACCGTGGGACACCCATATTTACTCATTTGCAATCCTCTCCTCTCTCTGTCTCCTCTCTTCACTCAGATCAAGGAGGTAAACGAGAATTACATGATTTATTGCTTCATGAAGATAACAAATTCTGTGCAGATTGTGGAGCTCCTGACCCGAAATGGGCGTCAACAAATATTGGAGTTTTCTTATGCTTAAAGTGTTGTGGGGTGCATCGAAGCCTCGGTACACATATATCCAAGGTACTATCTGTTGCACTAGATGAGTGGTCCGAAGATGACATCGATGCTATGGTTGAGGTTGGGGGGAATGCTTCGGTCAATGCGGTTTATGAGGCTCTTATTCCTCAAGGTCATTCTAAGCCGGGACCACGTGCTAGCCCTGATGAGCGTTCAGCATTCATCCGGTCTAAGTATGAGCTCCAAGAATTCATGAAACCGAGTTTGCGTCTTCAGTCGACTAATTCTACCCATTCTACCATTTCTACCAAGTCTGATAAGATCTCTTCTGAACCTAGTTTGTCTCAAAAGATTATGGGTAGTTTTCGGAGCTCACATTCTCCCAAGAATTCTGAAGCTGGCATGGTTGAATTTATTGGATTACTGAAGGTCAAAGTGATTAAGGGCACAAATTTAACGATAAAAGATTTTAGGTCGAGTGATCCTTATGTCATCTTGACTCTTGGACAACAGACTGTTCGGACAAAAGTCCAAGAGCGGAACTTGAATCCAATATGGAATGAGGTGCTCATGCTATCGGTACCTCAGCACTATGGCCCCTTAAAGTTGGAGGTGTTTGATCACGACGCATTATCAGCCGACGACATAATGGGAAATTCTGAAATTAACCTCCAACCTATAATATCATCTGCAATTGCAACAGGGGACGCTAAAATGTTTGGAGATATGCAGATTGGAAAATGGCAGAGGTCTGAGGATAACGGTCTCTTAGATGATAGCCATGTCAATATAGTAGACGGGAAGGTAAAACAAGAGGTATCACTTAAGCTTTCTAATACTGAAACCGGAGAGATATATCTGGAGCTAGAATGGATCCCCCTCGACCAGTAG 2097 42.11 MSNYPVDLGRPVSAKRKLKDLLLQKDNRTCADCGAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVMLDEWSDEEIDSMMEVGGNSSANAIYEAFIPEGHSKPKPDASHDERTKFIRSKYELQEFLKPSLRIMSTKSGKSSLEASLSRKLMDSFRSSNSSHNYEGMVEFIGLLKVKVVKGTNLAIRDMMTSDPYVILNLGQQTVQTTVVKSNLNPVWNEELMLSVPQNYGALKLRVFDYDTFSADDIMGEAEIDLQPMIASAMAFGDAGMFGNMQIGKWLKSHDNALIKDSTVNIIDGKMRQEISLKLQNVECGDYRLNNFYLGSGFGLALGCRPIPTIICNRGTPIFTHLQSSPLSVSSLHSDQGGKRELHDLLLHEDNKFCADCGAPDPKWASTNIGVFLCLKCCGVHRSLGTHISKVLSVALDEWSEDDIDAMVEVGGNASVNAVYEALIPQGHSKPGPRASPDERSAFIRSKYELQEFMKPSLRLQSTNSTHSTISTKSDKISSEPSLSQKIMGSFRSSHSPKNSEAGMVEFIGLLKVKVIKGTNLTIKDFRSSDPYVILTLGQQTVRTKVQERNLNPIWNEVLMLSVPQHYGPLKLEVFDHDALSADDIMGNSEINLQPIISSAIATGDAKMFGDMQIGKWQRSEDNGLLDDSHVNIVDGKVKQEVSLKLSNTETGEIYLELEWIPLDQ 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10615499 10621585 - Conep05aG0159100.1 Cone5ag1543 438561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1543 698 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 5 322 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cone5ag1543 698 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 540 698 - -
Cone5ag1543 698 MobiDBLite consensus disorder prediction 494 515 - -
Cone5ag1543 698 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 542 693 IPR035892 -
Cone5ag1543 698 ProSiteProfiles C2 domain profile. 525 639 IPR000008 -
Cone5ag1543 698 SMART arf_gap_3 16 137 IPR001164 GO:0005096(InterPro)
Cone5ag1543 698 SMART arf_gap_3 373 494 IPR001164 GO:0005096(InterPro)
Cone5ag1543 698 CDD C2_ArfGAP 541 685 - -
Cone5ag1543 698 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cone5ag1543 698 ProSiteProfiles C2 domain profile. 157 272 IPR000008 -
Cone5ag1543 698 Pfam C2 domain 542 633 IPR000008 -
Cone5ag1543 698 Pfam C2 domain 175 261 IPR000008 -
Cone5ag1543 698 Gene3D C2 domain 173 319 IPR035892 -
Cone5ag1543 698 ProSiteProfiles ARF GTPase-activating proteins domain profile. 372 497 IPR001164 GO:0005096(InterPro)
Cone5ag1543 698 FunFam stromal membrane-associated protein 1 isoform X1 360 492 - -
Cone5ag1543 698 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 129 IPR001164 GO:0005096(InterPro)
Cone5ag1543 698 Gene3D Arf GTPase activating protein 356 493 IPR038508 -
Cone5ag1543 698 Gene3D Arf GTPase activating protein 10 136 IPR038508 -
Cone5ag1543 698 CDD C2_ArfGAP 174 318 - -
Cone5ag1543 698 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Cone5ag1543 698 Pfam Putative GTPase activating protein for Arf 373 489 IPR001164 GO:0005096(InterPro)
Cone5ag1543 698 SUPERFAMILY ArfGap/RecO-like zinc finger 373 489 IPR037278 -
Cone5ag1543 698 CDD ArfGap 18 124 - -
Cone5ag1543 698 SMART C2_3c 543 638 IPR000008 -
Cone5ag1543 698 SMART C2_3c 176 271 IPR000008 -
Cone5ag1543 698 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 175 319 IPR035892 -
Cone5ag1543 698 CDD ArfGap 375 481 - -
Cone5ag1543 698 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Cone5ag1543 698 Gene3D C2 domain 540 698 IPR035892 -
Cone5ag1543 698 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Cone5ag1543 698 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Cone5ag1543 698 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Cone5ag1543 698 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 173 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0481 Cone-Chr5:2024642 Cone5ag1543 Cone-Chr5:10615499 4.36E-104 dispersed
Cone5ag1000 Cone-Chr5:4320413 Cone5ag1543 Cone-Chr5:10615499 4.49E-105 dispersed
Cone5ag1543 Cone-Chr5:10615499 Cone9ag1159 Cone-Chr9:8233758 1.80E-36 dispersed
Cone1ag0302 Cone-Chr1:2253274 Cone5ag1543 Cone-Chr5:10615499 1.96E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1543 K12486 - mdm:103446114 535.028