Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1545 ATGGCGTTTGCAATGCACAAAGATGCGTCTAATAAGCAGATGGATTCGAGCAAGTACGTGAGATATACTTCAGAGCAAGTTGAGGCCTTAGAGAGGGTTTATACTGAGTGTCCTAAGCCTTGCTCTTTAAGAAGGCATCAGCTCATTAGGGAGTGCCCTATTTTGTCTAATATTGAGCCCAAACAGATCAAAGTCTGGTTTCAGAATCGCAGATGCCGCGAAAAGCAGAGGAAAGAGTCTTCTCGTCTCCAGACGGTGCATATGAAGTTGAATTCCATGAACAAGTTGTTAATGGAAGAGAATGACCGGTTACAGAAGCAAGTTTCACACTTGGTTTATGAAAACGGCTATATGCGCCAACAATTGCACATTACATCTGGGACGACCACGGATAACAGTTGTGAATCATCAGTAGTCATGAGTGGTCAACGCCAACAACAGAAGAAAGCAACACCTCGGCATCCCCAAAGGGATGTCAATGACCCAGCTGGTCTTCTTGCAATAGCTGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTTGACTGGGTCCAGATAATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATTGTTGCCGTTTCTCGTAACTGCAGCGGAGTAGCGGCACGAGCCTGTGGTCTAGTCAGTCTAGAGCCAGCGGAGGTTGCTGAGATTGTTAAAGATCGCCCTTCCTGGTTTCGAGACTGTAGATCTCTTGATATATTCAGTGTAATACCTACTAGAAATGGGAGCACAATAGAGCTCATTCACATGCAGATGTATGCTCCTACAACATTGGCAGCTGCACGGGACTTCTGGATTCTGAGATATACTACAAGTTTGGAAGATGGAAGCTTAGTGATATGTGAGAGATCATTGAGTTCTTCAACTGGTGGCCCCACAGGGCCTCCGTCTTCCGGTTTTGTGAGGGCAGAAATGCTTCCGAGTGGTTATTTGATCCGAGCTTGTGAGGGTGGTGGATCCATTATCAATATTGTTGATCATGTCGACTTAGATGCGCGAAGCGTTCCGGAAGTTCTCAGGCCACTTTATGAATCATCCAAGATTCTTGCTCAGAAAATGACCATTGCTGCCTTGCGCCATGTAAGACAAATCGCACAAGAGTTGACTGGAGAGATTCAATATGCTGGGGGTCGCCAGCCAGCTGTTTTAAGGACATTTAGTCAGAGACTCTGCAGAGGATTCAATGATGCTGTTAATGGATTTGCGGATGATGGCTGGGCACTTATGAGTAATGATGGAGGGGACGATGTGACAATAATGATAAACTCGTCTCCTAGCAAATTTCTTGGGACCCACCACTATAATACGGCTATGTACTCGAGCTTTGGTGGTGGTGTGCTTTGTGCTAAGGCATCAATGCTTCTACAGGATGTTCCCCCTGCCTTGCTTGTTCGGTTCCTAAGAGAGCATCGTTCTGAATGGGCTGATTATGGTGTTGATGCGTATTCTGCTGCATGTCTTAGAGGTAGCCCATTTGCAGTTCCATGTGCAAGGCCCCGTGGATTTCCTAGCAGCCCGGTTATTTTGCCGCTTTCCCACACTGTTGAGCATGAGGAATCCTTGGAGGTGGTTCGGCTGGAGGGTCATATGTTTTCCCCTGAAGATATGGCTTTGGCTGGAGAAGATATGTACTTACTGCAGCTATGTAGTGGGGTGGATGAAAATTCAGTTGGTGCTTGTGCTCAGCTTGTGTTTGCGCCTATTGATGAATCGTTTGCTGATGATGCTCCCTTATGGCCTTCTGGGTTTCGCGTCATACCACTGGATCCCAAAAAAGATGGACAGGCAACTAATCGGACATTAGATTTGGCCTCTACACTTGAAGTGGGACCCGGTGTCACCCATCCATCCTTTGAATCCGAATCGAACTATTACAACCTTAGGTCAGTTTTGACTATTGCCTTCCAATTCACTTTTGAGAACCACATGCAAGACAGTGTTGCTGCAATGGCCCGGCAATATGTACGTAGTGTTGTGGGGTCTGTTCAGAGAGTCTCCATGGCTATTGCCCCTTCACAGCTCCGCTCCCATTTAGTCCCGAAATCACTTCCCAGCTCACCTGAAGCTCTTTCCTTGGCTCGATGGATTTGCCGAAGCTACAGGATCCATGGAGGGGAAGAGCTTTTTTGTTTTGAATCCTTGTCAGGTGATGCTATCTTGAAGCAGCTTTGGCATCATTCGGAAACAATCTTGTGCTGCTCTGTTAGAACTAATGCATCTCCTACGTTCACATTTGCCAACCAGGCTGGGCTTGACATGCTTGAAACTACTTTGGTGGCTCTACAAGATATAATGCTTGACAAGGTTCTTAATGATACTGGAAGGATGGTTCTCTGCTCAGAGTTTTCCAAGATAATGCAACAGGAGCTTGCACATCTGCCAGCTGGGATTTGTACGTCGAGTATGGGCAGGGCAGTATCTTACGAGCAGGCCATCGCATGGAAAGTGCTTGACGACGATGATTCTAATCACTGCCTAGCTCTCATGTTCATAAACTGGTCTTTTCTGTGA 2550 46.75 MAFAMHKDASNKQMDSSKYVRYTSEQVEALERVYTECPKPCSLRRHQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQTVHMKLNSMNKLLMEENDRLQKQVSHLVYENGYMRQQLHITSGTTTDNSCESSVVMSGQRQQQKKATPRHPQRDVNDPAGLLAIAEETLAEFLSKATGTAVDWVQIIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPAEVAEIVKDRPSWFRDCRSLDIFSVIPTRNGSTIELIHMQMYAPTTLAAARDFWILRYTTSLEDGSLVICERSLSSSTGGPTGPPSSGFVRAEMLPSGYLIRACEGGGSIINIVDHVDLDARSVPEVLRPLYESSKILAQKMTIAALRHVRQIAQELTGEIQYAGGRQPAVLRTFSQRLCRGFNDAVNGFADDGWALMSNDGGDDVTIMINSSPSKFLGTHHYNTAMYSSFGGGVLCAKASMLLQDVPPALLVRFLREHRSEWADYGVDAYSAACLRGSPFAVPCARPRGFPSSPVILPLSHTVEHEESLEVVRLEGHMFSPEDMALAGEDMYLLQLCSGVDENSVGACAQLVFAPIDESFADDAPLWPSGFRVIPLDPKKDGQATNRTLDLASTLEVGPGVTHPSFESESNYYNLRSVLTIAFQFTFENHMQDSVAAMARQYVRSVVGSVQRVSMAIAPSQLRSHLVPKSLPSSPEALSLARWICRSYRIHGGEELFCFESLSGDAILKQLWHHSETILCCSVRTNASPTFTFANQAGLDMLETTLVALQDIMLDKVLNDTGRMVLCSEFSKIMQQELAHLPAGICTSSMGRAVSYEQAIAWKVLDDDDSNHCLALMFINWSFL 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10640417 10647075 + Conep05aG0159300.1 Cone5ag1545 438563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1545 849 Gene3D - 9 84 - -
Cone5ag1545 849 SMART START_1 167 377 IPR002913 GO:0008289(InterPro)
Cone5ag1545 849 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 849 IPR044830 GO:0003700(InterPro)
Cone5ag1545 849 Pfam START domain 168 376 IPR002913 GO:0008289(InterPro)
Cone5ag1545 849 Coils Coil 87 107 - -
Cone5ag1545 849 Pfam MEKHLA domain 704 848 IPR013978 -
Cone5ag1545 849 MobiDBLite consensus disorder prediction 133 159 - -
Cone5ag1545 849 ProSiteProfiles START domain profile. 158 386 IPR002913 GO:0008289(InterPro)
Cone5ag1545 849 MobiDBLite consensus disorder prediction 133 149 - -
Cone5ag1545 849 SUPERFAMILY Bet v1-like 168 379 - -
Cone5ag1545 849 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Cone5ag1545 849 CDD bZIP 70 109 - -
Cone5ag1545 849 CDD START_ArGLABRA2_like 162 378 - -
Cone5ag1545 849 Gene3D - 170 380 IPR023393 -
Cone5ag1545 849 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Cone5ag1545 849 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
Cone5ag1545 849 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Cone5ag1545 849 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1266 Cone-Chr20:8282202 Cone5ag1545 Cone-Chr5:10640417 0 dispersed
Cone5ag1233 Cone-Chr5:5706683 Cone5ag1545 Cone-Chr5:10640417 0 dispersed
Cone1ag0299 Cone-Chr1:2187418 Cone5ag1545 Cone-Chr5:10640417 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46220 PF00004 AAA 4.60E-08 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1545 K09338 - rcu:8265527 1381.7