Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1559 ATGAACACCCATTCACACTCTCCATGTGCAGCATGCAAGTTCCTGCGAAGAAAATGTACAAGAGAGTGCGTTTTTGCACCCCATTTTCCTGCCGATCAGCCTCAAAAGTTTGCCTATGTCCACAAAATCTATGGAGCAAGCAATGTGGCCAAGATCTTAAACGATCTCAACCCTGCCGAACGAGAAGATGCGGTCAAGTCCTTAACCTATGAAGCCCAAGCTCGGATGCGTGATCCTATCTATGGTTGTATAGGTCTGATTTCAGTCCTTCAAAACAGGCTCAAACAACTTCAGAGTGAGGTTTTCAATGCTAGGAAAGAGCTTTCTACTTTCATTGGCCCTCAAGCTATGCTCCCTATTTATCAACCTCCTCCTGTTTTTGGGATTCAACAACAACAAGCTAACCATGTAGCTGCTGCTCCAATGGTTGCAATTCCAATGCAAGCCGGTGGTCCCGCGCCATTGATAATCCATGATCAGCTTCCTCGTCAGCAGCAACATCATGTCGTTGAAGCTCAACAATTCGCTCCGGAGGTGTTTATAGCTAATGATCAGCAAATTAAACAACATGATGATCAAGACACGGTTAGTTTTAATTGTGAGAGCGGGTTTAGTCAACAAGCTGGCTCAATTAATGCCGCTACATCAGGGTTCACCCAAATGACTATGAATTCTTGGGGTGTTGGTACAATGGAAAACCCTAATAACTACACCATTCAAGCACAACAAGTAGATCAATCTCCTGACTTTATCTACGACCAAGTTAAAGAGCAGTTTTTGCTTCATCCACAACCTGTCAATGTTGCGGTCTCGTCGCAACATTTGGCGCATCAAATATCTCAGCTCAAGCAACAACAACAACAGTTACAGAAATCAGTGGGGGATGATGGAAGTACTCTTCATCCTTAA 909 44.0 MNTHSHSPCAACKFLRRKCTRECVFAPHFPADQPQKFAYVHKIYGASNVAKILNDLNPAEREDAVKSLTYEAQARMRDPIYGCIGLISVLQNRLKQLQSEVFNARKELSTFIGPQAMLPIYQPPPVFGIQQQQANHVAAAPMVAIPMQAGGPAPLIIHDQLPRQQQHHVVEAQQFAPEVFIANDQQIKQHDDQDTVSFNCESGFSQQAGSINAATSGFTQMTMNSWGVGTMENPNNYTIQAQQVDQSPDFIYDQVKEQFLLHPQPVNVAVSSQHLAHQISQLKQQQQQLQKSVGDDGSTLHP 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10842839 10844191 + Conep05aG0160700.1 Cone5ag1559 438577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1559 302 Coils Coil 87 107 - -
Cone5ag1559 302 Coils Coil 272 292 - -
Cone5ag1559 302 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Cone5ag1559 302 Pfam Lateral organ boundaries (LOB) domain 8 104 IPR004883 -
Cone5ag1559 302 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1559 Cone-Chr5:10842839 Cone9ag1121 Cone-Chr9:7475993 1.21E-63 dispersed
Cone5ag1559 Cone-Chr5:10842839 Cone6ag1133 Cone-Chr6:8260428 9.03E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46221 PF07019 Rab5ip 1.50E-14 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1559 - - - 0.0