Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1564 ATGAGGCTCTCATCAGCTGGCTTTAGTCCTCAGACACAAGATGGGGAGAGAAGAGTGCTGAATTCAGAACTCTGGCATGCTTGTGCCGGTCCTCTTGTTTCTCTACCAATTATTGGAAGCCGGGTTGTTTATTTTCCACAAGGGCATAGTGAACAGGTCGCTGTTTCAACCAACCGAGAAGTGGATGCACATATCCCAAACTACCCGAGCTTACCACCCCAACTCATTTGTCAACTCCATAATGTCACCATGCATGCAGATGTTGAGACCGATGAAGTGTATGCCCAGATGACATTGCAGCCTCTGACTGCACAAGAACAAAAGGAAGCTTACCTTCCAGCTGAGTTGGGTTCCCCAAACAAACAGCCTACGAATTACTTTTGCAAGACCTTGACGGCTAGTGACACAAGTACTCATGGAGGATTTTCGGTTCCTCGTAGGGCAGCTGAGAAAGTGTTTCCTCCACTGGATTTTTCCCAGCAGCCTCCTTGCCAGGAGTTAATTGCTCGAGATCTGCATGACAATGAATGGAAATTTAGACATATATTTCGAGGGCAGCCCAAAAGGCACCTCCTTACTACAGGATGGAGCGTGTTTGTAAGTGCTAAACGCCTTGTTGCTGGTGATTCTGTGCTCTTTATCTGGAATGAAAAGAATCAATTGTTATTAGGAATCCGGAGAGCTAATCGTCCACAAACAGTGATGCCTTCTTCAGTTTTATCAAGTGATAGTATGCACTTAGGCCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAGTAGCCGTTTCACAATATTTTACAACCCAAGGGCTAGTCCTTCAGAATTTGTCATTCCCCTAGTCAAGTATGTCAAAGCAGTCTATCATACTCGGGTTTCTGTTGGGATGCGTTTTAGAATGCTGTTTGAAACTGAAGAATCTAGTGTTCGTCGTTACATGGGCACAATAACTGGCATTTGTGATTTGGATTCTACCAAGTGGTCAAATTCGCATTGGCGATCGGTCAAGGTTGGTTGGGATGAATCAACTGCAGGAGACAGACAACCAAGAGTTTCCTTGTGGGAAATCGAACCCTTAACAACTTTCCCGATGTATCCATCACCGTTTCCCATTAGACTTAAGCGACCATGGCCTGGTGGCCTCCCCTCTTTCCATGGCATGAAAGAGGACGATATGGGAATGAATACTCCAATGATGTGGTTAAGAGGAGATAATATGGACCGAGAAATCCAATCTCTGAACTTCCAGGGAATTGGAGTTTCACCATGGATGCAACAACCAAGGTTTGATGCTTCCGTTTTCGGTTTGCAATCCGAGATGTACCAGGCCATGGCCGCTGCTGCACTTCAAGAAATGAGAACCGTGGACCCATCTAAACCACAACCCAATTCGGTTTTGCAGTTCCAGCAAAATCCCCAAAATCTTCTTAGCCGGTCCGCCTCTACATTGATTCAGGCCTCTCCTCAAATGTTGCAACAATCTTCTCATGCCCAGGCTCAAGCTCATGCCCAGGCCCAAGCTCATGCCCAGGCCCAAGCTCATGCCCAGGCCCAAGCTCATGCCCAGGCCCAAGCTCATGCCCAGGCCCAAGCTCATGCCCAGGCCCAAGCTCATGCCCATGCCCAAGCTCATGCCCAAGCTCAGGCTCAGGCTCAAGCTCATGCCCAGGCTCAAGCTCAAGCTCAAGCCCAGGCTCAGGCTCAGGCTCAAGCTCAAGCTCAGGCTCAGGCCCAGGCCCAGGCCCAGGCCCAAGCCCGGGCTCGGGCTCAGGCTCAGGCTCATGTTATTCAGCAGCAAATTCCACAATCATCACATCAGCAGCAACAACCTGTGCCACATCAGCAGCAACAAGCGCCACCACATCAGCAATTAGTCGATAATCAGCAGATTCCAAGCAACATCTCCACGATGCCTCAGATGTCTCAGTTTGCATCACTATGCCCACCACAAAGGAGCTTTTCCGATTCAAACAATGTGACCAGCAGCGCAATGGTTTCACCATTGCATAACCTCCTTGGTTCCTATCATCAGGACGAATCAGCTCATCTTCTCAACCTTCCTAGAAACAGCAACAACAACTCCTTTATCCATTCTTCTTCCTCTCCTACTTGGCCTTCAAAACGAGTAGCAATTGATCCGCAATATGTTCTTTCCCAGACAGAACATTTAGGAACTCTTTCTCGGACTAGTAATGTTCCACATAGTCCTATTTCATTGCCACCCTTTCCAGGTAGTAGGGAGTGCTCGATTGACCAAGGGAGTACTGATTCCCAAAGCCATCTTCTATTCGGTGTTAATATTGAGCCTTCTTCCCTTCTCTTGCAAAACGGGGCTTCAAGCCTTAGGGGTGGAGGAGTTGGTAGTGAGAGTGACTCAACTGCTCTTCTCTTTGCTTCAAATTATATGAGTGGTAGTGGGACTGATTTTGCAGTCAATCCAACAATGGAACCTTCTAGTTGCATTGATGAGTCGGGTTTCTTGCAGTCGCAAGAACATGTGGGGGGCCAAGTTAACCCACGAACAAGAACCTTCGTTAAGGTGCACAAGTCGGGGTCCTTTGGTAGGTCATTGGATATAACGAAATTCAGTAGCTACCATGAACTACGCAGTGAGCTTGCTCGTATGTTTTGTTTAGAAGGTGAGTTGGAGGACCCCCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGATGTTCTTCTCCTCGGGGATGATCCTTGGCCGGAGTTTGTAAGCAGTGTGTGGTGTATAAAAATACTGTCACCACAAGAAGTGCAAGAAATGGGGAAGCGGGGTTTGGAGCTCTTGAACTCGGTACCGATTCAGAAGCTCTCCTCTTCCAACAACAGTGGCTGTGAAAACTATCCGAGCCTTCAAGAGTCGAGAAACATGAGCACTGGTATAACTTCTGTGGGGTCCCTAGACTATTGA 2937 47.97 MRLSSAGFSPQTQDGERRVLNSELWHACAGPLVSLPIIGSRVVYFPQGHSEQVAVSTNREVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKEAYLPAELGSPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPCQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATSSRFTIFYNPRASPSEFVIPLVKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDSTKWSNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPIRLKRPWPGGLPSFHGMKEDDMGMNTPMMWLRGDNMDREIQSLNFQGIGVSPWMQQPRFDASVFGLQSEMYQAMAAAALQEMRTVDPSKPQPNSVLQFQQNPQNLLSRSASTLIQASPQMLQQSSHAQAQAHAQAQAHAQAQAHAQAQAHAQAQAHAQAQAHAQAQAHAHAQAHAQAQAQAQAHAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQARARAQAQAHVIQQQIPQSSHQQQQPVPHQQQQAPPHQQLVDNQQIPSNISTMPQMSQFASLCPPQRSFSDSNNVTSSAMVSPLHNLLGSYHQDESAHLLNLPRNSNNNSFIHSSSSPTWPSKRVAIDPQYVLSQTEHLGTLSRTSNVPHSPISLPPFPGSRECSIDQGSTDSQSHLLFGVNIEPSSLLLQNGASSLRGGGVGSESDSTALLFASNYMSGSGTDFAVNPTMEPSSCIDESGFLQSQEHVGGQVNPRTRTFVKVHKSGSFGRSLDITKFSSYHELRSELARMFCLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVSSVWCIKILSPQEVQEMGKRGLELLNSVPIQKLSSSNNSGCENYPSLQESRNMSTGITSVGSLDY 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10893332 10899488 + Conep05aG0161200.1 Cone5ag1564 438582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1564 978 MobiDBLite consensus disorder prediction 488 550 - -
Cone5ag1564 978 MobiDBLite consensus disorder prediction 592 624 - -
Cone5ag1564 978 FunFam Auxin response factor 837 931 - -
Cone5ag1564 978 SUPERFAMILY CAD & PB1 domains 840 917 - -
Cone5ag1564 978 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Cone5ag1564 978 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
Cone5ag1564 978 Gene3D - 291 363 - -
Cone5ag1564 978 Gene3D - 125 228 IPR015300 -
Cone5ag1564 978 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 933 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone5ag1564 978 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone5ag1564 978 ProSiteProfiles PB1 domain profile. 842 926 IPR053793 -
Cone5ag1564 978 Pfam AUX/IAA family 836 931 IPR033389 -
Cone5ag1564 978 Gene3D - 838 931 - -
Cone5ag1564 978 MobiDBLite consensus disorder prediction 488 531 - -
Cone5ag1564 978 FunFam Auxin response factor 125 229 - -
Cone5ag1564 978 FunFam Auxin response factor 291 363 - -
Cone5ag1564 978 Pfam B3 DNA binding domain 127 229 IPR003340 GO:0003677(InterPro)
Cone5ag1564 978 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cone5ag1564 978 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0565 Cone-Chr10:2629367 Cone5ag1564 Cone-Chr5:10893332 2.48E-290 dispersed
Cone3ag0590 Cone-Chr3:2903718 Cone5ag1564 Cone-Chr5:10893332 9.48E-293 dispersed
Cone4ag0837 Cone-Chr4:5421395 Cone5ag1564 Cone-Chr5:10893332 9.40E-190 dispersed
Cone5ag1564 Cone-Chr5:10893332 Cone6ag0263 Cone-Chr6:1210550 5.04E-307 dispersed
Cone1ag0280 Cone-Chr1:1913667 Cone5ag1564 Cone-Chr5:10893332 0 wgd
Cone5ag1564 Cone-Chr5:10893332 Cone6ag0864 Cone-Chr6:4412479 5.56E-89 wgd
Cone5ag1564 Cone-Chr5:10893332 Cone9ag0869 Cone-Chr9:4229505 2.14E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46222 PF07714 PK_Tyr_Ser-Thr 5.60E-44 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1564 K14486 - rcu:8276588 877.47