Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1568 ATGGCGGCGAGGTCGTCAAGCGTAAGCCGGATTCGGGTCGGGAGGTACGAGCTGGGTCGGACCTTGGGTGAGGGTAACTTCGGGAAAGTGAAGTTCGCTAAAAACATGGAGACTGGTGAAAACGTCGCCATTAAAATACTCGACAAAGAGAAAGTTCTTAAGCACAAGATGATCGGCCAGATCAAACGTGAAATATGTACGATGAAACTGATTAAACATCCCAATGTTATCAGAATGTATGAGGTGATGGCTAGCAAGACCAAGATTTACATTGTTATGGAATTTGTGACTGGTGGGGAATTGTTTGACAAAATTTCAAGTACAGGGAGATTGAAAGAAGATGAAGCAAGGAACTATTTCCAGCAGCTTATAAATGCTGTTGATTATTGTCATAGTAGAGGAGTTTTTCATAGAGATCTAAAGCCAGAGAATCTGCTGCTGGATGCTAGTAATTTTCTAAAAGTTTCAGATTTTGGATTGAGCGCACTACCCCAACAAGTTAGAGAGGATGGATTACTCCACACAACATGTGGAACACCAAATTATGTTGCTCCAGAGGTGATAAAAAACAAAGGCTATGATGGAGCAAAGGCCGATTTGTGGTCTTGTGGTGTGATTCTCTTTGTCCTAATGGCTGGCTTTTTACCTTTCGAAGAGAACAACCTCATGGCATTATATAAGAAGATATTCAAGGCTGATTTTACAAGTCCACCATGGTTCTCTACTGGTGCAAAGAAACTAGTCAAGAGAATCCTTGACCCTAACCCCTCGACTAGAATAACCACTGCTGAGGTCATCGACAATGAATGGTTTAGAAAAGGATACAAGCCACCTACTTATGAACAAGGCGCTTGTAGCCTTGATGATGTTGAGTCTATCTTCAGTGAATCAGGGGAGTGTAGTAACCTTGTGGTGGAGAGGAGAGAAGAAGGGCCCATAGTGCCTGGCTCTATGAATGCTTTTGAGCTCATCTCTACATCCCAAGGCCTCAACCTCAGTATTCTTTTCGAGAAGCAAATGGGCCTTGTGAAATGTGAAACCAGATTCACGTCCAATCGTCCTGCTAGTGAGATTATTTCCAAAATTGAAGAAGCTGCTGGGCCATTGGGTTTTGATGTGAAGAAGAACAACTTCAAGATGATGCTTCAGGGAGAAAAAAGCGGTCGCAAGGGTCATTTATCTATTGCAACAGAGATTTTGGAAGTTGCCCCTTTACTCCACATGGTGGAGTTCCGTAAAGCCAGAGGAGATACATTAGAATTTCACAAGTTCTATAACAACCTCTCAACTGGGCTGAAAGATATCGTATGGAAGTCCAAAGATGGAGACGGAGATGGACATAGTGGTTAG 1350 42.81 MAARSSSVSRIRVGRYELGRTLGEGNFGKVKFAKNMETGENVAIKILDKEKVLKHKMIGQIKREICTMKLIKHPNVIRMYEVMASKTKIYIVMEFVTGGELFDKISSTGRLKEDEARNYFQQLINAVDYCHSRGVFHRDLKPENLLLDASNFLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIKNKGYDGAKADLWSCGVILFVLMAGFLPFEENNLMALYKKIFKADFTSPPWFSTGAKKLVKRILDPNPSTRITTAEVIDNEWFRKGYKPPTYEQGACSLDDVESIFSESGECSNLVVERREEGPIVPGSMNAFELISTSQGLNLSILFEKQMGLVKCETRFTSNRPASEIISKIEEAAGPLGFDVKKNNFKMMLQGEKSGRKGHLSIATEILEVAPLLHMVEFRKARGDTLEFHKFYNNLSTGLKDIVWKSKDGDGDGHSG 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10936351 10946327 - Conep05aG0161600.1 Cone5ag1568 438586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1568 449 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1568 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1568 449 Pfam NAF domain 315 375 IPR004041 GO:0007165(InterPro)
Cone5ag1568 449 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165(InterPro)
Cone5ag1568 449 SUPERFAMILY Protein kinase-like (PK-like) 12 282 IPR011009 -
Cone5ag1568 449 FunFam Non-specific serine/threonine protein kinase 9 311 - -
Cone5ag1568 449 FunFam Non-specific serine/threonine protein kinase 312 438 - -
Cone5ag1568 449 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 422 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone5ag1568 449 Gene3D Transferase(Phosphotransferase) domain 1 9 310 - -
Cone5ag1568 449 CDD STKc_SnRK3 15 270 - -
Cone5ag1568 449 FunFam Non-specific serine/threonine protein kinase 7 95 - -
Cone5ag1568 449 CDD CIPK_C 319 434 - -
Cone5ag1568 449 Gene3D Kinase associated domain 1, KA1 314 438 - -
Cone5ag1568 449 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1568 449 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
Cone5ag1568 449 SMART serkin_6 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0987 Cone-Chr18:7258528 Cone5ag1568 Cone-Chr5:10936351 1.72E-218 dispersed
Cone5ag1426 Cone-Chr5:9014618 Cone5ag1568 Cone-Chr5:10936351 7.11E-189 dispersed
Cone5ag1568 Cone-Chr5:10936351 Cone7ag0630 Cone-Chr7:3198882 5.51E-172 dispersed
Cone1ag0276 Cone-Chr1:1872727 Cone5ag1568 Cone-Chr5:10936351 1.70E-249 wgd
Cone5ag1568 Cone-Chr5:10936351 Cone6ag1118 Cone-Chr6:7140717 1.87E-273 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82885 PF07714 PK_Tyr_Ser-Thr 7.10E-44 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1568 - - - 0.0