Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1604 ATGAAGGTGGCGCACCTGAAAGAAGCATGGAACGCAACCCTATTCGTCGGAAAATTCCTCTGTGGTCTCCACCTCACCAACACTTACCTCTGCACCCCCACTTTCACCTATGGTCCTAGTATGGTTCCAACCTTGAATCTAAACGGCGATTTCCTCTTGACCGAACGGATCTCCTCCCGGTTTGGAAAAGTCGGCCCCGGAGACATTGTAATCGTTCGGTCTCCGCAGAATCCTCGCAAAGTCGTCACTAAACGCTGTTTGGCCATGGAGGGCGAGTCTATTACCTTTGTCGTTGATCCCAAAAACAGTGATGAGTGCCAGACAATCGTGGTTCCTAAGGGACACATTTGGATAGAGGGTGATAACATCTATGATTCCAATGATTCGAGGAAATTTGGTGCACTCCCTTATGGCCTTGTTGAAGGCAAAATTTTCTTGAGGATATGGCCTCCTGAAAGTTTTGGACCATTGGGAAAAGATAGCAGGAGGAATGATCCGGTCCCGTGA 507 48.52 MKVAHLKEAWNATLFVGKFLCGLHLTNTYLCTPTFTYGPSMVPTLNLNGDFLLTERISSRFGKVGPGDIVIVRSPQNPRKVVTKRCLAMEGESITFVVDPKNSDECQTIVVPKGHIWIEGDNIYDSNDSRKFGALPYGLVEGKIFLRIWPPESFGPLGKDSRRNDPVP 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11259903 11262003 - Conep05aG0165200.1 Cone5ag1604 438622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1604 168 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 6 157 IPR052064 GO:0006627(PANTHER)|GO:0042720(PANTHER)
Cone5ag1604 168 Pfam Signal peptidase, peptidase S26 23 96 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Cone5ag1604 168 Pfam Signal peptidase, peptidase S26 105 149 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Cone5ag1604 168 PRINTS Bacterial leader peptidase 1 (S26A) family signature 111 130 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cone5ag1604 168 PRINTS Bacterial leader peptidase 1 (S26A) family signature 29 45 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cone5ag1604 168 PRINTS Bacterial leader peptidase 1 (S26A) family signature 82 94 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cone5ag1604 168 SUPERFAMILY LexA/Signal peptidase 28 157 IPR036286 -
Cone5ag1604 168 Gene3D Umud Fragment, subunit A 26 163 - -
Cone5ag1604 168 FunFam Inner membrane protease subunit 1 27 156 - -
Cone5ag1604 168 CDD S26_SPase_I 33 144 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1604 K09647 - - csv:101209167 245.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1604 Cone-Chr5:11259903 Cone13ag1397 Cone-Chr13:10117948 9.58E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g374 . . . . . . . . . . . Cma07g00119 . . Sed14g1572 . . Bhi03g00057 Tan03g2678 Cmetu04g0352 . Hepe04g1978 . . Cla01g02387 Cam01g2500 Cec04g2148 Cco04g2225 Clacu01g2519 Cmu01g2385 Cre04g2053 . Cone5ag1604 . . Lsi01g00165 Csa06g03772 . Cme08g00155 . . . . . . . . . . Cmo07g00119 . . . . Cpe19g01126 . . . . . . . . . . . . . . . . . Chy02g00161 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone10ag1416 . 12 251 MADS-box Gene Family AT3G58780 63.8 4.9e-75 278.5
Cone6ag0933 . 18 274 MADS-box Gene Family AT3G58780 58.5 1.1e-71 267.3
Cone9ag0936 . 18 271 MADS-box Gene Family AT3G58780 58.1 9.9e-68 254.2
Cone17ag0728 . 1 187 MADS-box Gene Family AT3G58780 62.6 6.2e-62 235.0
Cone16ag0224 . 1 199 MADS-box Gene Family AT1G26310 61.7 3.0e-64 242.7
Cone17ag0728 . 1 230 MADS-box Gene Family AT4G09960 64.4 6.4e-74 274.6
Cone10ag1416 . 25 201 MADS-box Gene Family AT4G09960 71.8 7.1e-65 244.6
Cone6ag0933 . 20 207 MADS-box Gene Family AT4G09960 67.6 1.6e-64 243.4
Cone9ag0936 . 20 206 MADS-box Gene Family AT4G09960 68.1 1.8e-63 240.0
Cone4ag1281 . 1 149 MADS-box Gene Family AT4G09960 51.0 4.8e-37 152.1
Cone1ag1119 . 1 171 MADS-box Gene Family AT3G61120 53.2 1.5e-44 177.2
Cone15ag0346 . 1 218 MADS-box Gene Family AT4G11880 54.1 2.6e-48 189.5
Cone11ag0371 . 1 204 MADS-box Gene Family AT4G11880 55.4 1.3e-47 187.2
Cone18ag1119 . 1 205 MADS-box Gene Family AT4G11880 53.5 3.8e-47 185.7
Cone15ag0131 . 1 202 MADS-box Gene Family AT4G11880 52.2 4.0e-41 165.6
Cone14ag0123 . 1 212 MADS-box Gene Family AT4G11880 51.6 1.2e-40 164.1
Cone4ag1281 . 1 222 MADS-box Gene Family AT2G22630 63.7 7.8e-56 214.5
Cone20ag0564 . 1 218 MADS-box Gene Family AT2G22630 50.4 6.2e-53 204.9
Cone10ag1087 . 1 224 MADS-box Gene Family AT2G22630 58.4 7.5e-51 198.0
Cone11ag0371 . 1 204 MADS-box Gene Family AT4G22950 59.2 1.2e-53 207.2
Cone15ag0346 . 1 218 MADS-box Gene Family AT4G22950 54.8 7.8e-53 204.5
Cone18ag1119 . 1 213 MADS-box Gene Family AT4G22950 55.0 1.5e-51 200.3
Cone14ag0123 . 1 212 MADS-box Gene Family AT4G22950 52.8 5.6e-43 171.8
Cone15ag0131 . 1 212 MADS-box Gene Family AT4G22950 50.2 4.0e-41 165.6
Cone2ag0486 . 1 207 MADS-box Gene Family AT5G15800 55.2 2.1e-52 203.4
Cone18ag1146 . 1 198 MADS-box Gene Family AT5G15800 55.4 6.2e-49 191.8
Cone1ag1119 . 1 173 MADS-box Gene Family AT5G15800 57.4 1.0e-43 174.5
Cone15ag0346 . 1 158 MADS-box Gene Family AT2G45660 75.3 5.8e-58 221.1
Cone11ag0371 . 1 155 MADS-box Gene Family AT2G45660 73.5 1.2e-55 213.4
Cone18ag1119 . 1 156 MADS-box Gene Family AT2G45660 70.5 3.9e-54 208.4
Cone14ag0123 . 1 156 MADS-box Gene Family AT2G45660 62.8 8.1e-44 174.1
Cone15ag0131 . 1 156 MADS-box Gene Family AT2G45660 60.9 1.4e-43 173.3
Cone4ag1281 . 1 229 MADS-box Gene Family AT4G37940 59.3 3.0e-57 219.2
Cone20ag0564 . 1 216 MADS-box Gene Family AT4G37940 55.4 5.6e-56 214.9
Cone10ag1087 . 1 164 MADS-box Gene Family AT4G37940 67.1 3.5e-50 195.7
Cone9ag1445 . 2 234 MADS-box Gene Family AT2G22540 64.8 6.9e-71 264.6
Cone6ag1530 . 2 157 MADS-box Gene Family AT2G22540 76.3 3.2e-60 229.2
Cone7ag0856 . 1 233 MADS-box Gene Family AT2G22540 54.7 5.9e-54 208.4
Cone17ag1176 . 3 238 MADS-box Gene Family AT2G22540 51.9 2.7e-51 199.5
Cone4ag1298 . 1 235 MADS-box Gene Family AT2G22540 54.3 1.8e-50 196.8
Cone7ag0856 . 1 232 MADS-box Gene Family AT4G24540 57.9 6.8e-57 218.0
Cone17ag1176 . 3 238 MADS-box Gene Family AT4G24540 53.8 2.0e-56 216.5
Cone4ag1298 . 1 234 MADS-box Gene Family AT4G24540 56.6 2.2e-55 213.0
Cone20ag0555 . 3 238 MADS-box Gene Family AT4G24540 53.0 1.6e-53 206.8
Cone9ag1445 . 2 231 MADS-box Gene Family AT4G24540 53.5 6.0e-53 204.9
Cone6ag1530 . 2 176 MADS-box Gene Family AT4G24540 60.0 3.6e-50 195.7
Cone1ag1119 . 1 169 MADS-box Gene Family AT2G03710 53.5 2.4e-39 159.5
Cone6ag1100 . 1 158 MADS-box Gene Family AT5G23260 53.2 7.1e-40 161.8
Cone1ag1119 . 1 168 MADS-box Gene Family AT3G02310 57.9 7.4e-42 167.9
Cone2ag0486 . 1 110 MADS-box Gene Family AT3G02310 75.5 9.9e-39 157.5
Cone15ag0131 . 1 150 MADS-box Gene Family AT5G62165 64.0 1.7e-46 183.0
Cone15ag0346 . 1 145 MADS-box Gene Family AT5G62165 63.4 4.9e-46 181.4
Cone11ag0371 . 1 145 MADS-box Gene Family AT5G62165 62.1 7.1e-45 177.6
Cone18ag1119 . 1 145 MADS-box Gene Family AT5G62165 60.0 6.0e-44 174.5
Cone14ag0123 . 1 150 MADS-box Gene Family AT5G62165 60.0 5.1e-43 171.4
Cone10ag1087 . 1 143 MADS-box Gene Family AT2G14210 78.5 1.7e-53 206.8
Cone4ag1281 . 1 141 MADS-box Gene Family AT2G14210 77.6 4.9e-53 205.3
Cone20ag0564 . 1 142 MADS-box Gene Family AT2G14210 72.7 3.3e-49 192.6
Cone10ag1416 . 25 253 MADS-box Gene Family AT2G42830 65.1 9.3e-71 264.2
Cone6ag0933 . 18 274 MADS-box Gene Family AT2G42830 55.7 5.0e-64 241.9
Cone9ag0936 . 18 242 MADS-box Gene Family AT2G42830 60.9 2.1e-62 236.5
Cone17ag0728 . 1 183 MADS-box Gene Family AT2G42830 64.9 2.3e-61 233.0
Cone18ag1119 . 1 172 MADS-box Gene Family AT2G45650 54.7 1.0e-40 164.5
Cone11ag0371 . 1 172 MADS-box Gene Family AT2G45650 52.9 1.6e-38 157.1
Cone15ag0346 . 1 171 MADS-box Gene Family AT2G45650 50.9 2.0e-36 150.2
Cone5ag1604 . 41 158 MADS-box Gene Family AT1G29960 54.2 2.6e-37 152.1
Cone16ag0224 . 63 190 MADS-box Gene Family AT1G69120 62.8 1.2e-36 150.6
Cone15ag0131 . 1 144 MADS-box Gene Family AT5G51870 59.3 4.6e-41 165.2
Cone14ag0123 . 1 144 MADS-box Gene Family AT5G51870 57.9 5.7e-39 158.3
Cone18ag1119 . 1 144 MADS-box Gene Family AT5G51870 55.9 4.8e-38 155.2
Cone15ag0346 . 1 144 MADS-box Gene Family AT5G51870 53.8 5.3e-37 151.8
Cone11ag0371 . 1 144 MADS-box Gene Family AT5G51870 54.5 1.2e-36 150.6
Cone15ag0131 . 1 212 MADS-box Gene Family AT5G51860 52.6 1.8e-48 189.9
Cone16ag0224 . 63 252 MADS-box Gene Family AT5G60910 53.9 1.2e-40 163.7
Cone14ag0608 . 3 178 MADS-box Gene Family AT1G24260 60.1 2.1e-48 189.9
Cone15ag0614 . 1 191 MADS-box Gene Family AT1G24260 54.9 3.7e-48 189.1
Cone1ag1119 . 1 174 MADS-box Gene Family AT1G24260 53.9 1.1e-41 167.5
Cone16ag0224 . 1 158 MADS-box Gene Family AT1G24260 53.0 4.0e-39 159.1
Cone7ag1502 . 1 138 MADS-box Gene Family AT5G20240 65.5 8.2e-46 180.6
Cone7ag1502 . 1 138 MADS-box Gene Family AT5G20240 65.5 8.2e-46 180.6
Cone10ag1416 . 12 251 MADS-box Gene Family AT3G58780 63.8 4.9e-75 278.5
Cone6ag0933 . 18 274 MADS-box Gene Family AT3G58780 58.5 1.1e-71 267.3
Cone9ag0936 . 18 271 MADS-box Gene Family AT3G58780 58.1 9.9e-68 254.2
Cone17ag0728 . 1 187 MADS-box Gene Family AT3G58780 62.6 6.2e-62 235.0
Cone2ag0486 . 1 207 MADS-box Gene Family AT5G15800 55.2 2.1e-52 203.4
Cone18ag1146 . 1 198 MADS-box Gene Family AT5G15800 55.4 6.2e-49 191.8
Cone1ag1119 . 1 173 MADS-box Gene Family AT5G15800 57.4 1.0e-43 174.5
Cone1ag1119 . 1 169 MADS-box Gene Family AT2G03710 53.5 2.4e-39 159.5
Cone1ag1119 . 1 168 MADS-box Gene Family AT3G02310 57.9 7.4e-42 167.9
Cone2ag0486 . 1 110 MADS-box Gene Family AT3G02310 75.5 9.9e-39 157.5
Cone10ag1416 . 25 253 MADS-box Gene Family AT2G42830 65.1 9.3e-71 264.2
Cone6ag0933 . 18 274 MADS-box Gene Family AT2G42830 55.7 5.0e-64 241.9
Cone9ag0936 . 18 242 MADS-box Gene Family AT2G42830 60.9 2.1e-62 236.5
Cone17ag0728 . 1 183 MADS-box Gene Family AT2G42830 64.9 2.3e-61 233.0
Cone18ag1119 . 1 172 MADS-box Gene Family AT2G45650 54.7 1.0e-40 164.5
Cone11ag0371 . 1 172 MADS-box Gene Family AT2G45650 52.9 1.6e-38 157.1
Cone15ag0346 . 1 171 MADS-box Gene Family AT2G45650 50.9 2.0e-36 150.2
Cone16ag0224 . 63 190 MADS-box Gene Family AT1G69120 62.8 1.2e-36 150.6
Cone16ag0224 . 63 252 MADS-box Gene Family AT5G60910 53.9 1.2e-40 163.7
Cone14ag0608 . 3 178 MADS-box Gene Family AT1G24260 60.1 2.1e-48 189.9
Cone15ag0614 . 1 191 MADS-box Gene Family AT1G24260 54.9 3.7e-48 189.1
Cone1ag1119 . 1 174 MADS-box Gene Family AT1G24260 53.9 1.1e-41 167.5
Cone16ag0224 . 1 158 MADS-box Gene Family AT1G24260 53.0 4.0e-39 159.1
Cone16ag0224 . 1 199 MADS-box Gene Family AT1G26310 61.7 3.0e-64 242.7
Cone17ag0728 . 1 230 MADS-box Gene Family AT4G09960 64.4 6.4e-74 274.6
Cone10ag1416 . 25 201 MADS-box Gene Family AT4G09960 71.8 7.1e-65 244.6
Cone6ag0933 . 20 207 MADS-box Gene Family AT4G09960 67.6 1.6e-64 243.4
Cone9ag0936 . 20 206 MADS-box Gene Family AT4G09960 68.1 1.8e-63 240.0
Cone4ag1281 . 1 149 MADS-box Gene Family AT4G09960 51.0 4.8e-37 152.1
Cone1ag1119 . 1 171 MADS-box Gene Family AT3G61120 53.2 1.5e-44 177.2
Cone15ag0346 . 1 218 MADS-box Gene Family AT4G11880 54.1 2.6e-48 189.5
Cone11ag0371 . 1 204 MADS-box Gene Family AT4G11880 55.4 1.3e-47 187.2
Cone18ag1119 . 1 205 MADS-box Gene Family AT4G11880 53.5 3.8e-47 185.7
Cone15ag0131 . 1 202 MADS-box Gene Family AT4G11880 52.2 4.0e-41 165.6
Cone14ag0123 . 1 212 MADS-box Gene Family AT4G11880 51.6 1.2e-40 164.1
Cone4ag1281 . 1 222 MADS-box Gene Family AT2G22630 63.7 7.8e-56 214.5
Cone20ag0564 . 1 218 MADS-box Gene Family AT2G22630 50.4 6.2e-53 204.9
Cone10ag1087 . 1 224 MADS-box Gene Family AT2G22630 58.4 7.5e-51 198.0
Cone11ag0371 . 1 204 MADS-box Gene Family AT4G22950 59.2 1.2e-53 207.2
Cone15ag0346 . 1 218 MADS-box Gene Family AT4G22950 54.8 7.8e-53 204.5
Cone18ag1119 . 1 213 MADS-box Gene Family AT4G22950 55.0 1.5e-51 200.3
Cone14ag0123 . 1 212 MADS-box Gene Family AT4G22950 52.8 5.6e-43 171.8
Cone15ag0131 . 1 212 MADS-box Gene Family AT4G22950 50.2 4.0e-41 165.6
Cone15ag0346 . 1 158 MADS-box Gene Family AT2G45660 75.3 5.8e-58 221.1
Cone11ag0371 . 1 155 MADS-box Gene Family AT2G45660 73.5 1.2e-55 213.4
Cone18ag1119 . 1 156 MADS-box Gene Family AT2G45660 70.5 3.9e-54 208.4
Cone14ag0123 . 1 156 MADS-box Gene Family AT2G45660 62.8 8.1e-44 174.1
Cone15ag0131 . 1 156 MADS-box Gene Family AT2G45660 60.9 1.4e-43 173.3
Cone4ag1281 . 1 229 MADS-box Gene Family AT4G37940 59.3 3.0e-57 219.2
Cone20ag0564 . 1 216 MADS-box Gene Family AT4G37940 55.4 5.6e-56 214.9
Cone10ag1087 . 1 164 MADS-box Gene Family AT4G37940 67.1 3.5e-50 195.7
Cone9ag1445 . 2 234 MADS-box Gene Family AT2G22540 64.8 6.9e-71 264.6
Cone6ag1530 . 2 157 MADS-box Gene Family AT2G22540 76.3 3.2e-60 229.2
Cone7ag0856 . 1 233 MADS-box Gene Family AT2G22540 54.7 5.9e-54 208.4
Cone17ag1176 . 3 238 MADS-box Gene Family AT2G22540 51.9 2.7e-51 199.5
Cone4ag1298 . 1 235 MADS-box Gene Family AT2G22540 54.3 1.8e-50 196.8
Cone7ag0856 . 1 232 MADS-box Gene Family AT4G24540 57.9 6.8e-57 218.0
Cone17ag1176 . 3 238 MADS-box Gene Family AT4G24540 53.8 2.0e-56 216.5
Cone4ag1298 . 1 234 MADS-box Gene Family AT4G24540 56.6 2.2e-55 213.0
Cone20ag0555 . 3 238 MADS-box Gene Family AT4G24540 53.0 1.6e-53 206.8
Cone9ag1445 . 2 231 MADS-box Gene Family AT4G24540 53.5 6.0e-53 204.9
Cone6ag1530 . 2 176 MADS-box Gene Family AT4G24540 60.0 3.6e-50 195.7
Cone6ag1100 . 1 158 MADS-box Gene Family AT5G23260 53.2 7.1e-40 161.8
Cone15ag0131 . 1 150 MADS-box Gene Family AT5G62165 64.0 1.7e-46 183.0
Cone15ag0346 . 1 145 MADS-box Gene Family AT5G62165 63.4 4.9e-46 181.4
Cone11ag0371 . 1 145 MADS-box Gene Family AT5G62165 62.1 7.1e-45 177.6
Cone18ag1119 . 1 145 MADS-box Gene Family AT5G62165 60.0 6.0e-44 174.5
Cone14ag0123 . 1 150 MADS-box Gene Family AT5G62165 60.0 5.1e-43 171.4
Cone10ag1087 . 1 143 MADS-box Gene Family AT2G14210 78.5 1.7e-53 206.8
Cone4ag1281 . 1 141 MADS-box Gene Family AT2G14210 77.6 4.9e-53 205.3
Cone20ag0564 . 1 142 MADS-box Gene Family AT2G14210 72.7 3.3e-49 192.6
Cone5ag1604 . 41 158 MADS-box Gene Family AT1G29960 54.2 2.6e-37 152.1
Cone15ag0131 . 1 144 MADS-box Gene Family AT5G51870 59.3 4.6e-41 165.2
Cone14ag0123 . 1 144 MADS-box Gene Family AT5G51870 57.9 5.7e-39 158.3
Cone18ag1119 . 1 144 MADS-box Gene Family AT5G51870 55.9 4.8e-38 155.2
Cone15ag0346 . 1 144 MADS-box Gene Family AT5G51870 53.8 5.3e-37 151.8
Cone11ag0371 . 1 144 MADS-box Gene Family AT5G51870 54.5 1.2e-36 150.6
Cone15ag0131 . 1 212 MADS-box Gene Family AT5G51860 52.6 1.8e-48 189.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002901 0 2 0 0 1 1 1 1 1 2 1 2 3 2 2 3 2 1 3 1 2 2 2 2 1 2 2 0 6 2 50