Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag1608 | ATGTCTGATAAGTATTATGAGAGAGGGTCTAACTACAACCTAAAGATCCAGATGCAACTGCTAGATGATGATCACAATCAAAAGCCTTACGGAATTTCTGGGTCATCTTCCACAACTAATTATTACAATCTGCAAGCTGGGTTTGATCCAAACTGTTCATTCACGGGCTATAATATCAATAATAATTTTAATATTATTAATAACTGCTTCAATCGTGATGATCAAGCCGCTGCTGCTGCACCCATGGAATTATTCTCTTCTTACTACAACCCATCATCATCATCAATATTATCAAGAGTACCAAGCTTTGGTGTTAATGGCTTGTCGCCTACTCCATCTGAAGTGATTTCCTCCTTAGAATTAGGTCATGATCATCAAAAGGTTGAGGATCATGACAAGGCTGATATTAATTATGATGGATGTAATTCATTGGCTAGAAACTCATCTGCAGTTTCTTCTAATTCTTCCTCTGAGGCTCGCGTTAGTGCAGAAGATCGGAACTCTAGCAAGAGTGCTACTACTAAGAAGGAGATCAATAGGCAGTCTTCAAAATTGGAGGATGAGGAAGGAGGAGGAGGAGAAGAAGAAGAAGAAGAAGAAAGCTCTAAGAAAGTAGAACCCTTGAGCAAAGCTGGGAAGAAGAAAGGAGAGAAGAAGGAGAAGGAGCCAAGAGTTGCTTTCATGACAAAGAGTGAGGTTGATCATCTAGAAGATGGGTATAGATGGAGAAAATATGGACAAAAGGCTGTCAAGAATAGCCCTTATCCAAGAAGTTACTATAGGTGCACCACACAAAAATGTAAGGTGAAGAAACGAGTAGAGAGATCATATGAAGATCCATCTACGGTGATAACTACGTACGAAGGTCAACACAACCATCCACTCCCATCAACGCTTAGAGGACATAGTAATCACAACATGGCAGCAGCTTCTTCTTCTATTTTCCAACATTCAATGTCGCTGCCGCCGCCACAAATGGCGGCTCCGCGTTATAACTTTTCTCAGTTGTTGAGTACTACTCAAATGCCTCATCATCAGTATCTTAACCCTATCAGCTTCCATACCAACAGTTCCTCTGCCGCCACCTCCGATGGTTATTCGCAAATCACGAATCATTCTCATCATCAATATCATGATCAGTCTAATGACTATGGACTATTGCAAGACATTCTAAACCCCATGTTCCTTCAACAACACCCATGA | 1203 | 40.81 | MSDKYYERGSNYNLKIQMQLLDDDHNQKPYGISGSSSTTNYYNLQAGFDPNCSFTGYNINNNFNIINNCFNRDDQAAAAAPMELFSSYYNPSSSSILSRVPSFGVNGLSPTPSEVISSLELGHDHQKVEDHDKADINYDGCNSLARNSSAVSSNSSSEARVSAEDRNSSKSATTKKEINRQSSKLEDEEGGGGEEEEEEESSKKVEPLSKAGKKKGEKKEKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCKVKKRVERSYEDPSTVITTYEGQHNHPLPSTLRGHSNHNMAAASSSIFQHSMSLPPPQMAAPRYNFSQLLSTTQMPHHQYLNPISFHTNSSSAATSDGYSQITNHSHHQYHDQSNDYGLLQDILNPMFLQQHP | 400 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 11290360 | 11292542 | - | Conep05aG0165700.1 | Cone5ag1608 | 438626 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag1608 | 400 | MobiDBLite | consensus disorder prediction | 202 | 223 | - | - | |
Cone5ag1608 | 400 | SMART | WRKY_cls | 236 | 295 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone5ag1608 | 400 | MobiDBLite | consensus disorder prediction | 359 | 380 | - | - | |
Cone5ag1608 | 400 | MobiDBLite | consensus disorder prediction | 146 | 162 | - | - | |
Cone5ag1608 | 400 | Gene3D | WRKY domain | 221 | 297 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone5ag1608 | 400 | FunFam | WRKY transcription factor 57 | 222 | 296 | - | - | |
Cone5ag1608 | 400 | MobiDBLite | consensus disorder prediction | 163 | 188 | - | - | |
Cone5ag1608 | 400 | ProSiteProfiles | WRKY domain profile. | 231 | 296 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone5ag1608 | 400 | Pfam | WRKY DNA -binding domain | 237 | 294 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone5ag1608 | 400 | SUPERFAMILY | WRKY DNA-binding domain | 228 | 296 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone5ag1608 | 400 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 137 | 329 | IPR044810 | GO:0003700(InterPro) | |
Cone5ag1608 | 400 | MobiDBLite | consensus disorder prediction | 146 | 223 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0914 | Cone-Chr13:8023565 | Cone5ag1608 | Cone-Chr5:11290360 | 9.40E-42 | dispersed | |
Cone14ag0709 | Cone-Chr14:3846357 | Cone5ag1608 | Cone-Chr5:11290360 | 3.18E-41 | dispersed | |
Cone17ag0402 | Cone-Chr17:1912244 | Cone5ag1608 | Cone-Chr5:11290360 | 1.61E-39 | dispersed | |
Cone17ag0938 | Cone-Chr17:7335319 | Cone5ag1608 | Cone-Chr5:11290360 | 8.91E-29 | dispersed | |
Cone18ag0755 | Cone-Chr18:4193975 | Cone5ag1608 | Cone-Chr5:11290360 | 6.56E-45 | dispersed | |
Cone19ag0910 | Cone-Chr19:7071382 | Cone5ag1608 | Cone-Chr5:11290360 | 1.37E-40 | dispersed | |
Cone20ag0281 | Cone-Chr20:1257309 | Cone5ag1608 | Cone-Chr5:11290360 | 8.31E-29 | dispersed | |
Cone3ag1488 | Cone-Chr3:33533095 | Cone5ag1608 | Cone-Chr5:11290360 | 4.04E-45 | dispersed | |
Cone5ag1608 | Cone-Chr5:11290360 | Cone6ag0541 | Cone-Chr6:2670377 | 2.61E-37 | dispersed | |
Cone1ag0248 | Cone-Chr1:1653400 | Cone5ag1608 | Cone-Chr5:11290360 | 4.77E-188 | wgd | |
Cone10ag1424 | Cone-Chr10:11017299 | Cone5ag1608 | Cone-Chr5:11290360 | 4.37E-46 | wgd | |
Cone5ag1608 | Cone-Chr5:11290360 | Cone6ag0908 | Cone-Chr6:4663736 | 3.04E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46228 | PF00410 | Ribosomal_S8 | 2.70E-22 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag1608 | - | - | - | 0.0 |