Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1608 ATGTCTGATAAGTATTATGAGAGAGGGTCTAACTACAACCTAAAGATCCAGATGCAACTGCTAGATGATGATCACAATCAAAAGCCTTACGGAATTTCTGGGTCATCTTCCACAACTAATTATTACAATCTGCAAGCTGGGTTTGATCCAAACTGTTCATTCACGGGCTATAATATCAATAATAATTTTAATATTATTAATAACTGCTTCAATCGTGATGATCAAGCCGCTGCTGCTGCACCCATGGAATTATTCTCTTCTTACTACAACCCATCATCATCATCAATATTATCAAGAGTACCAAGCTTTGGTGTTAATGGCTTGTCGCCTACTCCATCTGAAGTGATTTCCTCCTTAGAATTAGGTCATGATCATCAAAAGGTTGAGGATCATGACAAGGCTGATATTAATTATGATGGATGTAATTCATTGGCTAGAAACTCATCTGCAGTTTCTTCTAATTCTTCCTCTGAGGCTCGCGTTAGTGCAGAAGATCGGAACTCTAGCAAGAGTGCTACTACTAAGAAGGAGATCAATAGGCAGTCTTCAAAATTGGAGGATGAGGAAGGAGGAGGAGGAGAAGAAGAAGAAGAAGAAGAAAGCTCTAAGAAAGTAGAACCCTTGAGCAAAGCTGGGAAGAAGAAAGGAGAGAAGAAGGAGAAGGAGCCAAGAGTTGCTTTCATGACAAAGAGTGAGGTTGATCATCTAGAAGATGGGTATAGATGGAGAAAATATGGACAAAAGGCTGTCAAGAATAGCCCTTATCCAAGAAGTTACTATAGGTGCACCACACAAAAATGTAAGGTGAAGAAACGAGTAGAGAGATCATATGAAGATCCATCTACGGTGATAACTACGTACGAAGGTCAACACAACCATCCACTCCCATCAACGCTTAGAGGACATAGTAATCACAACATGGCAGCAGCTTCTTCTTCTATTTTCCAACATTCAATGTCGCTGCCGCCGCCACAAATGGCGGCTCCGCGTTATAACTTTTCTCAGTTGTTGAGTACTACTCAAATGCCTCATCATCAGTATCTTAACCCTATCAGCTTCCATACCAACAGTTCCTCTGCCGCCACCTCCGATGGTTATTCGCAAATCACGAATCATTCTCATCATCAATATCATGATCAGTCTAATGACTATGGACTATTGCAAGACATTCTAAACCCCATGTTCCTTCAACAACACCCATGA 1203 40.81 MSDKYYERGSNYNLKIQMQLLDDDHNQKPYGISGSSSTTNYYNLQAGFDPNCSFTGYNINNNFNIINNCFNRDDQAAAAAPMELFSSYYNPSSSSILSRVPSFGVNGLSPTPSEVISSLELGHDHQKVEDHDKADINYDGCNSLARNSSAVSSNSSSEARVSAEDRNSSKSATTKKEINRQSSKLEDEEGGGGEEEEEEESSKKVEPLSKAGKKKGEKKEKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCKVKKRVERSYEDPSTVITTYEGQHNHPLPSTLRGHSNHNMAAASSSIFQHSMSLPPPQMAAPRYNFSQLLSTTQMPHHQYLNPISFHTNSSSAATSDGYSQITNHSHHQYHDQSNDYGLLQDILNPMFLQQHP 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11290360 11292542 - Conep05aG0165700.1 Cone5ag1608 438626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1608 400 MobiDBLite consensus disorder prediction 202 223 - -
Cone5ag1608 400 SMART WRKY_cls 236 295 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag1608 400 MobiDBLite consensus disorder prediction 359 380 - -
Cone5ag1608 400 MobiDBLite consensus disorder prediction 146 162 - -
Cone5ag1608 400 Gene3D WRKY domain 221 297 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag1608 400 FunFam WRKY transcription factor 57 222 296 - -
Cone5ag1608 400 MobiDBLite consensus disorder prediction 163 188 - -
Cone5ag1608 400 ProSiteProfiles WRKY domain profile. 231 296 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag1608 400 Pfam WRKY DNA -binding domain 237 294 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag1608 400 SUPERFAMILY WRKY DNA-binding domain 228 296 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag1608 400 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 137 329 IPR044810 GO:0003700(InterPro)
Cone5ag1608 400 MobiDBLite consensus disorder prediction 146 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0914 Cone-Chr13:8023565 Cone5ag1608 Cone-Chr5:11290360 9.40E-42 dispersed
Cone14ag0709 Cone-Chr14:3846357 Cone5ag1608 Cone-Chr5:11290360 3.18E-41 dispersed
Cone17ag0402 Cone-Chr17:1912244 Cone5ag1608 Cone-Chr5:11290360 1.61E-39 dispersed
Cone17ag0938 Cone-Chr17:7335319 Cone5ag1608 Cone-Chr5:11290360 8.91E-29 dispersed
Cone18ag0755 Cone-Chr18:4193975 Cone5ag1608 Cone-Chr5:11290360 6.56E-45 dispersed
Cone19ag0910 Cone-Chr19:7071382 Cone5ag1608 Cone-Chr5:11290360 1.37E-40 dispersed
Cone20ag0281 Cone-Chr20:1257309 Cone5ag1608 Cone-Chr5:11290360 8.31E-29 dispersed
Cone3ag1488 Cone-Chr3:33533095 Cone5ag1608 Cone-Chr5:11290360 4.04E-45 dispersed
Cone5ag1608 Cone-Chr5:11290360 Cone6ag0541 Cone-Chr6:2670377 2.61E-37 dispersed
Cone1ag0248 Cone-Chr1:1653400 Cone5ag1608 Cone-Chr5:11290360 4.77E-188 wgd
Cone10ag1424 Cone-Chr10:11017299 Cone5ag1608 Cone-Chr5:11290360 4.37E-46 wgd
Cone5ag1608 Cone-Chr5:11290360 Cone6ag0908 Cone-Chr6:4663736 3.04E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46228 PF00410 Ribosomal_S8 2.70E-22 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1608 - - - 0.0