Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1609 ATGGAAAAAGAGCCTCTTCTTCCCTCCTACACAAACCCTAGAACAACAAGACCACCACCTCTCTGCCCTCTCCCTGAAGAAGACGAAATCACTCTCACTCTCCCTCTCCCTCTCCCTCTAACCCCTACAGAACTCAAAGACCTTCTCATCTTCGGCCCTTCTTCTTCCCCTCACGATTCCTCCCCCATTTTCGACGCCATAACCCTCTCTCTCTCCTCCCCTAAAAAACCCTCTTCCCCCTCCCCCTCCTCTTCTTGTTCGCAACAACCCATTTCTCCTTTTCATCTCCTCGACCCAGATCTTCCATGGACCAAATACAACCTCCATCGTTCCAAAACAGCACCTGCCATGGCGGTCATCAATGAAGTCATCCCTCATAACCTGACCCCACCTCCCCAATTCGATGACCAATCCATAGTTCGTCAGGCTTGTGTTTTCTTATTCATATACTTATCACTAGGTGTGATTATATACTGGTTTAATAGTCATAATTTCTCTGCTATTGAAAAAACCAATCCTATAGTTGATGCACTATACTTTTGCATTGTTACAATGTGTACAATAGGGTATGGAGATATCACTCCAAATAGTACTTCTACAAAGCTATTTTCCATACTATTTGTATTAGTCGGGTTCGGTTTTATCGATATTTTACTCACTGGAATGGTTAGCTACATGCTTGATTTACAAGAAAGCTATTTGTTAAGAAATGTTACTAATAAGGATCAAAAAGAGTCTTCTTCTTCATCATCATCATCATCTAAAAAAGGGTCGTATATAGTTGATGTGAAGAAGGGGAGAATGAGGATTAGGATGAAAGTGGGATTGGCTTTAGGGGTTGTTGTTATATGTATAGGGGTTGGTGCTTGCGTGATGCATTTTATGGAGCAGTTAAAGTGGTTGGATTCAATTTATTTGTCGGTTATGTCGGTTACGACAGTTGGTTATGGTGATCGGGCATTTACGTCTATGAACGGTCGTATCTTTGCTTCGGTTTGGTTGCTTGTGTCTACACTTGCAGTTGCTCGGGCGTTTCTTTATTTGGCCGAGGCGAGGGTGGATAAGCGGCATAGGAAGATGGCTAAGTGGATTCTTGGTCAAGATATGACTGTTTCCGAGTTTCTTGCTGCTGATATTGATAATAATGGGTTTGTGAGTAAATCGGAGTTTGCCATATTCAAGCTCAAGGAGATGGGGAAGATATCGGAGAAAGACATTTTACAGATTTGCAGTACGTTTGATCGGTTGGATGCAGGCAAATGTGGAAAAGTCACTCTTGCCGATCTCCTCGAAAATCATAACTAG 1305 42.61 MEKEPLLPSYTNPRTTRPPPLCPLPEEDEITLTLPLPLPLTPTELKDLLIFGPSSSPHDSSPIFDAITLSLSSPKKPSSPSPSSSCSQQPISPFHLLDPDLPWTKYNLHRSKTAPAMAVINEVIPHNLTPPPQFDDQSIVRQACVFLFIYLSLGVIIYWFNSHNFSAIEKTNPIVDALYFCIVTMCTIGYGDITPNSTSTKLFSILFVLVGFGFIDILLTGMVSYMLDLQESYLLRNVTNKDQKESSSSSSSSSKKGSYIVDVKKGRMRIRMKVGLALGVVVICIGVGACVMHFMEQLKWLDSIYLSVMSVTTVGYGDRAFTSMNGRIFASVWLLVSTLAVARAFLYLAEARVDKRHRKMAKWILGQDMTVSEFLAADIDNNGFVSKSEFAIFKLKEMGKISEKDILQICSTFDRLDAGKCGKVTLADLLENHN 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11296569 11299267 - Conep05aG0165800.1 Cone5ag1609 438627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1609 434 PRINTS Two pore domain K+ channel signature 183 211 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cone5ag1609 434 PRINTS Two pore domain K+ channel signature 312 321 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cone5ag1609 434 Pfam Ion channel 146 226 IPR013099 -
Cone5ag1609 434 Pfam Ion channel 282 350 IPR013099 -
Cone5ag1609 434 MobiDBLite consensus disorder prediction 1 26 - -
Cone5ag1609 434 SUPERFAMILY EF-hand 373 430 IPR011992 -
Cone5ag1609 434 Gene3D - 132 261 - -
Cone5ag1609 434 SUPERFAMILY Voltage-gated potassium channels 265 369 - -
Cone5ag1609 434 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 174 381 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Cone5ag1609 434 FunFam Two-pore potassium channel 3 257 371 - -
Cone5ag1609 434 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Cone5ag1609 434 Gene3D - 343 434 - -
Cone5ag1609 434 SUPERFAMILY Voltage-gated potassium channels 142 236 - -
Cone5ag1609 434 Gene3D - 279 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1489 Cone-Chr3:33540578 Cone5ag1609 Cone-Chr5:11296569 2.51E-100 dispersed
Cone5ag1609 Cone-Chr5:11296569 Cone9ag0012 Cone-Chr9:59796 6.96E-58 dispersed
Cone19ag0587 Cone-Chr19:5180283 Cone5ag1609 Cone-Chr5:11296569 1.23E-131 transposed
Cone1ag0247 Cone-Chr1:1641684 Cone5ag1609 Cone-Chr5:11296569 1.80E-135 wgd
Cone10ag1423 Cone-Chr10:11013242 Cone5ag1609 Cone-Chr5:11296569 2.25E-98 wgd
Cone10ag1423 Cone-Chr10:11013242 Cone5ag1609 Cone-Chr5:11296569 2.25E-98 wgd
Cone5ag1609 Cone-Chr5:11296569 Cone6ag0909 Cone-Chr6:4668373 2.28E-50 wgd
Cone5ag1609 Cone-Chr5:11296569 Cone9ag0915 Cone-Chr9:4502453 1.77E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1609 K05389 - csv:101220017 543.117