Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1625 ATGCAACCGATTCCCGGCAGTCCTGCTACTCCCAGGACTAGATTGGAAAGGCTTCTAAGGGAAAGAGAGTTAAGAAAATCGAACCGTTCTTCCCTTCTTAGTGAGGAGTCAAGAGATGTTGGTAATAAGCAATCTGAACTCTATGGAAATGATCCATTTTTCCAAGGTGAAAATTGGGGTCTACTTAATGAAGAAGAGTTCTTGGCAAGAGCTTTTGGTGATGCATGGGAAAGGGAAAATGAACGGCCCACTAAGCAACGGTTATTGGTTGTGGCCAATAGGTTGCCTGTTTCTGCTGTTAGAAAGGGCGAGGACTCATGGCAACTCGAAATTAGTGTTGGAGGATTGGTCAGTGCACTTTTAGGTGTGAAGGAGTTTGATGCAAGATGGATTGGTTGGGCTGGTGTAAATGTACCTGATGAAGCTGGACAAAGAGCTCTTGAAAAAGCCTTAGCAGAAAAGAGGTGCATCCCAGTTTTTCTTGATGAGGAGATTGTTCATCAATATTACAACGGCTATTGCAACAATATATTGTGGCCTCTTTTCCACTATCTTGGCCTTCCACAAGAAGATCGTCTTGCAACTACAAGAGATTTTCAATCTCAATTTGATGCATATAAGAAGGCTAACCAGATGTTTGCTGATGTCGTGAACAAACATTATGAGGAAGGAGATGTTGTTTGGTGCCATGACTACCATCTAATGTTTTTACCAAAATGTTTGAAAGAGTATAACAATAATATGAAAGTTGGTTGGTTTCTCCACACACCGTTTCCTTCCTCGGAAATTCATCGGACTCTTCCATCTCGTTCAGAGCTACTCAGATCCGTTCTTGCTGCTGATTTAGTCGGTTTTCACACGTATGATTATGCAAGGCACTTTGTGAGTGCTTGCACTCGCATTTTAGGCCTTGAAGGTACGCCGGATGGAGTGGAGGACCAAGGGAAGCTCACTCGTGTAGCTGCTTTTCCTATCGGTATAGATTCTGATCGATTTATTCGAGCTCTTGAGCTTCCTCGAGTCCAAGAACACATGAAAGAATTGAAGGAACGATTTGCTGGCAGAAAGGTAATGTTGGGCGTCGATCGTCTTGATATGATTAAGGGGATACCCCAAAAGATTTTGGCATTTGAAAAATTCCTTGAGGAAAATCCAAAATGGCGTGATAAAGTAGTTTTGCTGCAAATTGCTGTGCCAACAAGGACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTTCATGAGATTGTCGGACGAATTAATGGAAGGTTTGGAACTCTCACTGCTGTTCCAATACATCATCTGGATCGATCTCTTGACTTTCATGCCTTATGTGCACTCTATGCTGTTACAGATGTAGCACTTGTTACATCGTTAAGGGATGGAATGAACCTCGTTAGCTATGAGTTTGTAGCATGCCAGGCTTCCAAGAAGGGGGTTCTCATCCTGAGTGAGTTTGCGGGGGCGGCACAGTCTCTTGGGGCCGGTGCTATTTTGGTTAACCCATGGAATGTCACAGAGGTTGCTGCTTCTATTGGTTATGCTTTGGATATGCTGGCCGATGAACGAGAAAAACGACACCTCCACAATTTCATGCATGTAACAACTCACACTTCCCAAGAATGGGCTGCAACCTTTGTGAGTGAACTGAATGATACTGTAGTTGAAGCTCAACTAAGGACGAGACAAGTTCCGCCAGTACTTCCAATGACAGAAGCAGTTGAACGATATGAAAAATCCCATAATAGATTACTTATTCTGGGATTCAATGCTACCTTAACTGAACCAGTGGGTGCATTAGATAGAAGGGGTCAACAGATGAGAGAAATGGAGCCTAAACTTCATCCAGAAATAAAAGAACCCTTGAAGAGGCTTTGCGATGACCCTAAGACAACCATAGTTGTCCTAAGTGGAAGTGGTCGAAGTGTCATGGATGATAATTTCGGTGAATATAACATGTGGTTGGCAGCAGAGAACGGGATGTTTTTACGTCTTACTAAGGGAGAATGGATGACTACAATGCCGGAAAATTTACATATGGATTGGGTTGATAGTGTGAAGCATGTGTTTGAATACTTCACTGAAAGAACGCCTCGATCCCATTTTGAAGTTCGTGAAACTTCACTTGTATGGAATTACAAGTATGCAGACATCGAATTTGGAAGGCTTCAAGCAAGAGATATGCTGCAGCATCTGTGGACTGGCCCAATCTCAAATGCATCTGTTGATGTTATTCAGGGAAGCAGAGCAGTTGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCGATTGATCGTATATTAGGCGAGATAGTTCACGACAAAGGCATGAAGACGCCCATAGACTATGTCCTTTGTATCGGGCACTTTCTAGCTAAGGACGAAGATGTCTACACATTTTTCGAGCCCGAGCTTCCTTCAGAAACATCACCTGTAACGAGAGCTGTAACAACTAGTCCTAGTAGGTCCTCCACGCCAAAGTTTTCTGCCACCAAATTGGGTTCAAAGCCTTCTCGCCACAAGAAACAACAGTCGATGTCGAGTTTAGAAAAGAAATCGGAATTGAACAATGGGATTGGGGTTGGTAGGAGGCCAATATCTGTAGAGAGAATGTCGATGAATGAAGGCTCTTCTGTTCTTGATCTAAGGGGTGACAATTACTTCTCATGTTCAGTGGGACGGAAGAGATCGAGTGCCAGATACCTTCTCGGAACATCTGATGATGTTGGCACTCTCTTGAAGGAGTTGTCCGGCTGTCTTCGTCCTGGAGTCGATTAA 2781 43.58 MQPIPGSPATPRTRLERLLRERELRKSNRSSLLSEESRDVGNKQSELYGNDPFFQGENWGLLNEEEFLARAFGDAWERENERPTKQRLLVVANRLPVSAVRKGEDSWQLEISVGGLVSALLGVKEFDARWIGWAGVNVPDEAGQRALEKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRDFQSQFDAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEYNNNMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPDGVEDQGKLTRVAAFPIGIDSDRFIRALELPRVQEHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNVTEVAASIGYALDMLADEREKRHLHNFMHVTTHTSQEWAATFVSELNDTVVEAQLRTRQVPPVLPMTEAVERYEKSHNRLLILGFNATLTEPVGALDRRGQQMREMEPKLHPEIKEPLKRLCDDPKTTIVVLSGSGRSVMDDNFGEYNMWLAAENGMFLRLTKGEWMTTMPENLHMDWVDSVKHVFEYFTERTPRSHFEVRETSLVWNYKYADIEFGRLQARDMLQHLWTGPISNASVDVIQGSRAVEVRAVGVTKGAAIDRILGEIVHDKGMKTPIDYVLCIGHFLAKDEDVYTFFEPELPSETSPVTRAVTTSPSRSSTPKFSATKLGSKPSRHKKQQSMSSLEKKSELNNGIGVGRRPISVERMSMNEGSSVLDLRGDNYFSCSVGRKRSSARYLLGTSDDVGTLLKELSGCLRPGVD 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11434317 11441565 - Conep05aG0167400.1 Cone5ag1625 438643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1625 926 Gene3D - 612 771 IPR023214 -
Cone5ag1625 926 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 334 536 - -
Cone5ag1625 926 FunFam Alpha,alpha-trehalose-phosphate synthase 611 682 - -
Cone5ag1625 926 CDD GT20_TPS 87 552 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone5ag1625 926 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 87 552 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
Cone5ag1625 926 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 86 555 - -
Cone5ag1625 926 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 80 917 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cone5ag1625 926 Gene3D Glycogen Phosphorylase B; 334 536 - -
Cone5ag1625 926 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 677 757 - -
Cone5ag1625 926 MobiDBLite consensus disorder prediction 811 833 - -
Cone5ag1625 926 SUPERFAMILY HAD-like 585 773 IPR036412 -
Cone5ag1625 926 Gene3D - 677 757 - -
Cone5ag1625 926 MobiDBLite consensus disorder prediction 810 864 - -
Cone5ag1625 926 MobiDBLite consensus disorder prediction 27 47 - -
Cone5ag1625 926 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 79 333 - -
Cone5ag1625 926 Pfam Glycosyltransferase family 20 87 552 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone5ag1625 926 CDD HAD_TPP 585 805 - -
Cone5ag1625 926 Pfam Trehalose-phosphatase 610 829 IPR003337 GO:0005992(InterPro)
Cone5ag1625 926 Gene3D Glycogen Phosphorylase B; 78 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1625 Cone-Chr5:11434317 Cone6ag0352 Cone-Chr6:1717486 2.57E-137 dispersed
Cone1ag0235 Cone-Chr1:1538897 Cone5ag1625 Cone-Chr5:11434317 0 wgd
Cone5ag1625 Cone-Chr5:11434317 Cone6ag0210 Cone-Chr6:992992 0 wgd
Cone5ag1625 Cone-Chr5:11434317 Cone9ag0238 Cone-Chr9:1015255 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1625 K16055 - vvi:100255459 1527.3