Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1634 ATGGAAATTTCACTCTCTTTCTCGCTTCGTCTCTGTTGCATTTTTGTCTCTCTGTTGAGGCAATTAGCCTTTGATACTGCTGCTGGGCTGCCTAAACAAGAAGTGGATGCCCTTAAAGAAATAGCAAAAGAATTGGGGAAGAAAGATTGGAACTTTGATGTAGATCCTTGCATTATTAACGATTCCACTTGGAACGCACCATTAATTGCTGGGTCCTTGTATAGAAGCAATCTCAACTGCACTTGCTTGGACCCGTCCGGTGAATGCCATGTCACTGCCATATATCTTAAAGCACAAGATCTTGATGGTGTACTTCCACCTTCTATAGTGAAGCTTCCCTACCTCAAGTTAATTGATCTTGCTCGGAATTACCTGACCGGTACAATACCGCGTGAATGGAATTCTACTCATTTGGAAAGTTTGTCTGTCTCTGTGAACAAGTTATCTGGAACGATTCCTTACTACTTGGGTGGCATTACCACTCTTAAGCGTTTGAATCTCGAGAACAATCTCTTTTCTGGAACCATTCCACCGCAGCTCGGAAATTTGGTTAACTTGGAGGCTGTCTCTTTTAGTGCCAACAATCTCACAGGAGTGTTGCCTCTGACTTTCACTAATCTAACCAAATTACTAGAATTTCGAATAAGCAATAACAATTTCACCGGTAAAATACCGAACTTCTTCCCGGATTGGAAACACCTTGAGAAAATAGAGATTCTTGGTAGTGGTCTAGATGGCCCCATTCCTCCTAGCATTTCCGGATTAATAAATTTAACCATGCTAAAAATTAGCGACTTAAAGGGGGATCAGGGTTCAACATTTCCAAACATAAGTAGCATGAGTACCATGAGATATTTGATGCTAAGGAGTTGCAATATCTCTGGACAAATCCCGGAATATATTGCAAATTTGGCGGCGCTGGAGTTCTTTGATCTAAGTTTTAACCGGTTGGAAGGAGAGATTCCGGATCTATCAGGTCTAACTAGGTTGACATTCATGTATTTAACAGGCAACTTGCTCGGAGGACCTATTCCCGCGTGGATTAAGAACAGAGAGAGTAACTACCATGTAGATCTTTCATACAATAACTTTTTGGAGAGTTCAGTGCCACCTGATTGTAGAGAAAATATCAATTTGTATAGATGTTTTTCTGGACAAGATAAATCAATATTAGCTCAATGCATGAGGGATCAATGCTCAGAAGATAAGTACTCAGTTCACATAAACTGTGGTGGACAAGACACTAAAATCGGAAAAATCAAGTACGAAGGCGATCAACAACAAGCTGGAGGCGAAACCAAATTTGTGCCATCAGCTAAGAATTGGGGATTTAGTAGCACCGGCCAATTCTGGGAAACTAAAATTACACCAAATGACTTCATTTACAATAACAAATCCATTCTTACAATGCAAGATTCCGAACTATACACAAACGCAAGAACCTCCCCTCTTTCCCTTACTTATTATGCTCGTTGCTTAGCAAATGGGAACTATAATGTGAGACTTCACTTTGCTGAGATTGTGTTTAGAGGCAATAGATCTTTTCATAGTCTTGGAAGAAGGGTATTTGATGTTTATATCCAGGATGAGCTAAAGGTGAAAGATTTCAATATTGAAGAAAGGGCGCCAGGGGTTGATAAGGCGTTCATTATTCCATTCAAAGCAACTGTTACGAATCGGAATTTAGAGATTCATTTTCGTTGGGCTGGAAAAGGGACCACAGTTGCTCCGAAGATTGAAACCTATGGCCCTCTTATTTCAGCTATCTCCATAGAATCTGAGTCCCCCCCTCCAAGTGAGAGTAGGACGAAACTCATTTTGGGCGGGACCCTTGGGGCCGTATCTTTGTTATGCTTGATTTCCATGGTTTTGCTAGTTCTATGGTGGAAAGGCCATTTGGGAAGCCGAAATTCTGATGAAACAGATCTCAAAGGGTTGGATGTGCAAACTGGTATTTTTAGCTTCAGACAAATAAAATCTGCCACTAATAGCTTTGATCCGGCTAACAAACTAGGTGAAGGCGGTTTTGGAGCTGTCTACAAGGGCATATTGTCGGACGGTACTATTATAGCGGTCAAGCAACTTTCTTCAAGATCAAAGCAAGGGAACAGAGAATTTGTAAATGAGATAGGGATGATTTCTGGTTTGCATCATCCAAATCTCGTCAAATTGTATGGATGTTGTGTTGAAGGAAAGGAACTGTTGTTGGTCTATGAATACATGGAAAACAATAGTCTTTCACATTCATTGTTCGGTCCGGATGACAGCCCGCCAAAACTGGACTGGCCCACGAGGTGGAAAATTTGTGCTGGAATAGCAAGAGGTTTGGCTTTCTTACATGAACAGTCAGCACTAAAAATTATTCATAGAGACATCAAAACTACCAATGTTCTATTGGATAGAAACCTCAATGCGAAAATTTCGGATTTCGGTTTGGCCAAGCTTGATGAAGAGGATATGACCCACATTAGCACTAGAGTAGCTGGAACTCTGGGGTATATGGCACCAGAATATGCTTTGTGGGGTTATTTGACCTATAAAGTCGATGTTTACAGTTTCGGAGTTGTAGCATTAGAACTAGTTGCCGGAAGGAACAATACGAAATTTCAATCAATTGAGAATTACTTTTGCCTTTTGGATTGGGCTCTTGTTTTACGGCAAGAAGGGAACTTATTGGAGATCGCGGACCCTAGATTAGGGTCCGATTATAACAAAGAAGAGGCACTGAGGATGATTAAGATAGCTCTACTATGCACTAATCCATCTCCAGCTCTACGGCCTATGATGTCTGAAGTGGTTAATATGATTGAAGGCCAAACTGCAGTCCGTGAACTTGCTGGCGATTCTGGGGATGAAATGAGGTTTAAAGCATTTAGAGGGCAGTTTGGTCAAGTCCATGATGAAGACATCTCAAAAGAAACTGTTACTCTCTTGCATTCTTCAATGTCCATTGATTCTTCTTCCACGTCATAG 2973 41.07 MEISLSFSLRLCCIFVSLLRQLAFDTAAGLPKQEVDALKEIAKELGKKDWNFDVDPCIINDSTWNAPLIAGSLYRSNLNCTCLDPSGECHVTAIYLKAQDLDGVLPPSIVKLPYLKLIDLARNYLTGTIPREWNSTHLESLSVSVNKLSGTIPYYLGGITTLKRLNLENNLFSGTIPPQLGNLVNLEAVSFSANNLTGVLPLTFTNLTKLLEFRISNNNFTGKIPNFFPDWKHLEKIEILGSGLDGPIPPSISGLINLTMLKISDLKGDQGSTFPNISSMSTMRYLMLRSCNISGQIPEYIANLAALEFFDLSFNRLEGEIPDLSGLTRLTFMYLTGNLLGGPIPAWIKNRESNYHVDLSYNNFLESSVPPDCRENINLYRCFSGQDKSILAQCMRDQCSEDKYSVHINCGGQDTKIGKIKYEGDQQQAGGETKFVPSAKNWGFSSTGQFWETKITPNDFIYNNKSILTMQDSELYTNARTSPLSLTYYARCLANGNYNVRLHFAEIVFRGNRSFHSLGRRVFDVYIQDELKVKDFNIEERAPGVDKAFIIPFKATVTNRNLEIHFRWAGKGTTVAPKIETYGPLISAISIESESPPPSESRTKLILGGTLGAVSLLCLISMVLLVLWWKGHLGSRNSDETDLKGLDVQTGIFSFRQIKSATNSFDPANKLGEGGFGAVYKGILSDGTIIAVKQLSSRSKQGNREFVNEIGMISGLHHPNLVKLYGCCVEGKELLLVYEYMENNSLSHSLFGPDDSPPKLDWPTRWKICAGIARGLAFLHEQSALKIIHRDIKTTNVLLDRNLNAKISDFGLAKLDEEDMTHISTRVAGTLGYMAPEYALWGYLTYKVDVYSFGVVALELVAGRNNTKFQSIENYFCLLDWALVLRQEGNLLEIADPRLGSDYNKEEALRMIKIALLCTNPSPALRPMMSEVVNMIEGQTAVRELAGDSGDEMRFKAFRGQFGQVHDEDISKETVTLLHSSMSIDSSSTS 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11537601 11543968 - Conep05aG0168600.1 Cone5ag1634 438652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1634 990 Gene3D - 400 595 - -
Cone5ag1634 990 Gene3D Phosphorylase Kinase; domain 1 632 740 - -
Cone5ag1634 990 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524(InterPro)
Cone5ag1634 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1634 990 Pfam Protein tyrosine and serine/threonine kinase 669 934 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1634 990 Gene3D Transferase(Phosphotransferase) domain 1 741 950 - -
Cone5ag1634 990 ProSiteProfiles Protein kinase domain profile. 665 942 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1634 990 Gene3D Ribonuclease Inhibitor 31 267 IPR032675 -
Cone5ag1634 990 SUPERFAMILY Protein kinase-like (PK-like) 647 937 IPR011009 -
Cone5ag1634 990 CDD STKc_IRAK 671 938 - -
Cone5ag1634 990 Gene3D Ribonuclease Inhibitor 268 399 IPR032675 -
Cone5ag1634 990 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 36 200 - -
Cone5ag1634 990 SMART serkin_6 665 929 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1634 990 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 634 740 - -
Cone5ag1634 990 Pfam Malectin domain 405 589 IPR021720 -
Cone5ag1634 990 SUPERFAMILY L domain-like 81 378 - -
Cone5ag1634 990 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 961 IPR051824 -
Cone5ag1634 990 Pfam Leucine Rich Repeat 210 229 IPR001611 GO:0005515(InterPro)
Cone5ag1634 990 Pfam Leucine Rich Repeat 162 183 IPR001611 GO:0005515(InterPro)
Cone5ag1634 990 Pfam Leucine Rich Repeat 284 304 IPR001611 GO:0005515(InterPro)
Cone5ag1634 990 ProSiteProfiles Leucine-rich repeat profile. 306 328 IPR001611 GO:0005515(InterPro)
Cone5ag1634 990 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 403 594 - -
Cone5ag1634 990 FunFam Putative LRR receptor-like serine/threonine-protein kinase 741 947 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1634 Cone-Chr5:11537601 Cone6ag0207 Cone-Chr6:977819 2.54E-223 dispersed
Cone5ag1634 Cone-Chr5:11537601 Cone5ag1635 Cone-Chr5:11545512 3.45E-33 tandem
Cone1ag0229 Cone-Chr1:1463415 Cone5ag1634 Cone-Chr5:11537601 2.75E-252 wgd
Cone10ag1425 Cone-Chr10:11022006 Cone5ag1634 Cone-Chr5:11537601 9.11E-125 wgd
Cone10ag1407 Cone-Chr10:10929164 Cone5ag1634 Cone-Chr5:11537601 4.09E-237 wgd
Cone5ag1634 Cone-Chr5:11537601 Cone6ag0936 Cone-Chr6:4814838 3.69E-234 wgd
Cone5ag1634 Cone-Chr5:11537601 Cone6ag0206 Cone-Chr6:969913 1.98E-211 wgd
Cone5ag1634 Cone-Chr5:11537601 Cone6ag1067 Cone-Chr6:6274520 5.59E-79 wgd
Cone5ag1634 Cone-Chr5:11537601 Cone9ag0938 Cone-Chr9:4639911 1.75E-51 wgd
Cone5ag1634 Cone-Chr5:11537601 Cone9ag0235 Cone-Chr9:991865 3.80E-223 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82888 PF15511 CENP-T_C 1.80E-08 CL0012 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1634 - - - 0.0