Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1637 ATGGCATTCAAGCAGGCCGAGCTCTCGACAGAGGAGGTTCTAAGGAGGGACATCCCATGGGAGACATATATGACAACTAAACTGATTAGTGGAACGAGTCTACAGCTATTAAGGCGTTACGATAAGAGGCCAGAAAGCTATAGAGCTCAATTGTTGGATGAAGATGGCCTTTCTTATGTTAGAGTCTTTTTTAGCATTCTGCGTGATATTTTTAAGGAGGAAACAGTGGAATATGTTCTTGCATTGATTGATGAAATGCTTACTGCAAACCTGAAAAGAGCAAGGCTGTTCCATGATAATTCTATTGCAGATGAAGGCACTTATGAGCCTTTCTTAAGATTGCTTTGGCGTGGTAACTGGTTCATTCAAGAGAAGAGCTGTAAAATACTTGCTTTGATAGTGAGTGCAAGGGCAAAAAACAAGGATGGCATTGCTGCAAATGGAGATGCCTCAAACTCGAAAAAAATGATCACTTCTACAACTGATGTGTTGAAAGGATTGGTAGAGTGGCTTTGTGCTCAGCTTAAGAAGCCTTCTCATCCTAATCGTGGCGTCCAAGTTGCCATCCATTGCCTTGCAACTTTGCTCAAGGAACCAGTCGCCAGATCCTCATTTGTTCAAGCAGATGGAGTGAAACTTCTCATTCCTTTCATTTCTCCTGTTTCCACACAACAATCTATACAGCTGCTCTACGAAACCTGTCTCTGTATCTGGCTGTTATCCTACTATGAGCCTGCAATTGAATATTTTGCCACCTCTAGAGCACTTCCAAGACTCACCGAAGTAGTCAAGAGTTCCACAAAGGAGAAGGTTGTCCGAGTTGTTGTCTTGACCCTAAAGAACCTGCTGTCCAAAGGCACATTTGGTGCTCAAATGGTGGACCTTGGTCTACCACAAATCGTTCAAAGCTTAAAGACGCAGGCTTGGAGTGATGAGGACCTGTTGGAAGCTTTGAATCAACTTGAGGAAGGGCTGAAGGATAACATCAAAAAACTAAGTTCTTTCGACAAATATAAGCAAGAGGTCCTCACTGGTCATCTTGAATGGTCTCCTACGCACAAAGATCCTCTCTTCTGGCGTGAAAATATTACCAACTTTGAAGAGAATGATTTCCAGATTCTTCGGGTTCTAATTACGATTCTGGACACATCGAACGATGCAAGGTCTCTAGCAGTTGCTTGCTATGACCTCTCACAATTCATTCAGCATCATCCGGCTGGAAGAGTCATTGTGACGGACCTCAAGGCCAAAGACCGGGTGATGAAGTTGATGAATTATGAGAATGCAGAGGTCACCAAAAATGCTCTTCTCTGTATACAAAGGCTCTTTCTAGGTGCGAAATATGCAAGCTTCTTGCAAGTTTAA 1365 42.93 MAFKQAELSTEEVLRRDIPWETYMTTKLISGTSLQLLRRYDKRPESYRAQLLDEDGLSYVRVFFSILRDIFKEETVEYVLALIDEMLTANLKRARLFHDNSIADEGTYEPFLRLLWRGNWFIQEKSCKILALIVSARAKNKDGIAANGDASNSKKMITSTTDVLKGLVEWLCAQLKKPSHPNRGVQVAIHCLATLLKEPVARSSFVQADGVKLLIPFISPVSTQQSIQLLYETCLCIWLLSYYEPAIEYFATSRALPRLTEVVKSSTKEKVVRVVVLTLKNLLSKGTFGAQMVDLGLPQIVQSLKTQAWSDEDLLEALNQLEEGLKDNIKKLSSFDKYKQEVLTGHLEWSPTHKDPLFWRENITNFEENDFQILRVLITILDTSNDARSLAVACYDLSQFIQHHPAGRVIVTDLKAKDRVMKLMNYENAEVTKNALLCIQRLFLGAKYASFLQV 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11555188 11558311 - Conep05aG0168900.1 Cone5ag1637 438655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1637 454 Gene3D - 6 333 IPR011989 -
Cone5ag1637 454 SUPERFAMILY ARM repeat 10 444 IPR016024 -
Cone5ag1637 454 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 400 407 IPR018506 GO:0020037(InterPro)
Cone5ag1637 454 Pfam V-ATPase subunit H 6 325 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone5ag1637 454 Gene3D - 345 446 IPR038497 -
Cone5ag1637 454 Pfam V-ATPase subunit H 331 443 IPR011987 GO:0000221(InterPro)|GO:1902600(InterPro)
Cone5ag1637 454 FunFam V-type proton ATPase subunit H 345 446 - -
Cone5ag1637 454 PIRSF V-ATP_synth_H 2 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone5ag1637 454 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 2 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone5ag1637 454 SMART arm_5 197 242 IPR000225 GO:0005515(InterPro)
Cone5ag1637 454 SMART arm_5 243 284 IPR000225 GO:0005515(InterPro)
Cone5ag1637 454 SMART arm_5 404 444 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0912 Cone-Chr1:54620738 Cone5ag1637 Cone-Chr5:11555188 6.08E-36 dispersed
Cone1ag0913 Cone-Chr1:54622932 Cone5ag1637 Cone-Chr5:11555188 1.78E-25 dispersed
Cone5ag0623 Cone-Chr5:2669204 Cone5ag1637 Cone-Chr5:11555188 1.29E-55 dispersed
Cone1ag0227 Cone-Chr1:1455604 Cone5ag1637 Cone-Chr5:11555188 1.74E-305 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1637 K02144 - mdm:103406616 746.888