Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag1638 | ATGCAGTTGGTAGCAGAAACGCTTGGAATCTACTTCGTGATATTCATAGGAGGTGGGGCAGTGATTGTAAATTTGAACAATGACAAGGTGGTTACGTTGCCTGGAATTTCAATAGCTTGGGGGCTTGTTGTTATGGCCATGGCTTATTCTGTGGGCCATATCTCTGGGGCCCATTTCAACCCTGCTGTCACCATTGCTTTTGCTTCTACCGGCCGCTTTCCATGGCAACAGGTACCACCATATATAATGGCACAAGTGATTGGATCATTGCTAGGAAGTGGTACCCTTAGACTATTGTTTACCGGAAAAGAGAACCATTTTGCCGGAACAGCACCTGCTGGATCAGACATACAAGCATTTGTGATCGAGTTCATCATCACTTTTTACCTCATGTTTGTTATCTCTGGTGTAGCTACTGATAATAGAGCGATTGGTGAGCTTGCTGGACTTGCTGTTGGCTCCACAGTTCTATTCAACGTGTTGATGGCAGGGCCAATAACAGGAGCATCAATGAACCCAGCAAGGAGCCTGGGGCCCGCAATAGTATGGCACCAATACAGAGGGCTGTGGGTATATCTGACGGCTCCTATTCTAGGAGCAGTCGCCGGAATCTGGGTCTACGGTTTCATCAGGTTCACTGACAAGCCATTGAGAGAGATCACTAGGAGTGGCTCCTTCCTCAAAGCAGCAGCTGGCAAAGCCTAG | 705 | 47.8 | MQLVAETLGIYFVIFIGGGAVIVNLNNDKVVTLPGISIAWGLVVMAMAYSVGHISGAHFNPAVTIAFASTGRFPWQQVPPYIMAQVIGSLLGSGTLRLLFTGKENHFAGTAPAGSDIQAFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLFNVLMAGPITGASMNPARSLGPAIVWHQYRGLWVYLTAPILGAVAGIWVYGFIRFTDKPLREITRSGSFLKAAAGKA | 234 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 11560497 | 11561622 | + | Conep05aG0169000.1 | Cone5ag1638 | 438656 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag1638 | 234 | Gene3D | Glycerol uptake facilitator protein. | 1 | 220 | IPR023271 | - | |
| Cone5ag1638 | 234 | CDD | MIP | 2 | 210 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1638 | 234 | PRINTS | Major intrinsic protein family signature | 190 | 210 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1638 | 234 | PRINTS | Major intrinsic protein family signature | 1 | 20 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1638 | 234 | PRINTS | Major intrinsic protein family signature | 153 | 175 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1638 | 234 | PRINTS | Major intrinsic protein family signature | 40 | 64 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1638 | 234 | PRINTS | Major intrinsic protein family signature | 122 | 140 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1638 | 234 | PRINTS | Major intrinsic protein family signature | 77 | 96 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1638 | 234 | PANTHER | AQUAPORIN NIP2-1 | 2 | 215 | IPR034294 | - | |
| Cone5ag1638 | 234 | Pfam | Major intrinsic protein | 2 | 207 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1638 | 234 | ProSitePatterns | MIP family signature. | 58 | 66 | IPR022357 | - | |
| Cone5ag1638 | 234 | NCBIfam | MIP family channel protein | 5 | 207 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone5ag1638 | 234 | SUPERFAMILY | Aquaporin-like | 2 | 219 | IPR023271 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone5ag1638 | Cone-Chr5:11560497 | Cone8ag0521 | Cone-Chr8:3729290 | 4.00E-58 | dispersed | |
| Cone5ag1638 | Cone-Chr5:11560497 | Cone6ag0938 | Cone-Chr6:4829715 | 1.34E-127 | wgd | |
| Cone5ag1638 | Cone-Chr5:11560497 | Cone9ag0941 | Cone-Chr9:4650979 | 3.83E-127 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag1638 | K09874 | - | vvi:100263543 | 360.918 |