Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag1640 | ATGGCGAGCGCGGCGATATTCTCGTCGTTAAGGAGGCAGAAATCGCCATCGGTGGTGGCATTTTTAGCTCCGGTTAATCTCACCGACGTTGCTCTTGTACATACCCTAGCATCAGTTTCCACTGACCTGATTTCATGCTTTTCCGCCGCGTCGTTTTTCTTCCAGTGTAAGAATTCACGGTCTCTTATACGCAAAATCGAGGTTCTTCTTGTGTTTCTGGAGTGTTTGAAGGAATCCGGCCAGACTTTGCCTCCGACGGGAGTGCTTTGTTTCAAGGAGGTTTATTTGTTGCTTTATCGGTCCAAGATGTTGCTTGATTATTGTTCTCAATCAGGTAAGATATGGCTATTGCTTCAAAACCACTCGATTTCAGGCCATTTTCATGATTTAAACCTAGAAATTTCAACTCTTTTGGATGTATTCCCATTTGATGAAGTTGAACTGGGGTTAGAGGTTAAGGAGCAGATTGAGCTTTTGCAGAAACAATCAAGAAGAGCAGAACTATTTATCGATAAGCACGATGAAGTGCTTAGATATCAACTCTTCTCATTTCTTGATGTTTTTGAAAATGGGAAGATCCCCAATAAGGAAGAATTGCAGGAGTTCTTTGTAGATAAATTGGGGATTAGAGATGCTAAGAGTTGCAGAGCTGAAATTGAGTTTTTGGAGGAACAGATTGTTAATAATAACGGAGATGTTGAGCCAACAGTCTCGATCCTAAACGGTTTTGTTTCACTGACAAGATATAGTAGGTTCTTACTTTTTGGATTTGAAGAGGATGAACTAGATTTGAGAAATGGAAACCAGAAGAAGCTGAAAAGGGGGTTGATATCTCAAGAAATTGCGGATACCTTTATAACGATTCCGAAGGACTTTTGCTGCCCAATATCATTAGATTTGATGAAAGACCCAGTAATAATTTCTACAGGACAAACATATGACAGAAGTTCAATCACAAGATGGATGGAAGCAGGTCATTGTACTTGCCCCAAAACCGGTCAAATGGTTGATTTAACCCGCCTCATTCCAAACCGAGCTTTAAGGAATCTGATCATGCAGTGGTCTTCGGCTCATGGAATTCCTTATGATCCACCGGAGGGTATGGATTTATCAGGTGAAATCTTTTCATCTGGTTGTCCCACAGAGGCTGCACTTGGAGCTAACCGAGCAACGGCTGAGCTTCTTATCAATGAGCTAGCAACTGGGTCTCAAGATGGAAAGACTATAGCTGCCAGAGAGATCCGTTTATTAGCCAAAACCGGAAAGGAAAACCGTGCCTTCATTGCAGAAGCCGGGGCTATCCCATATCTTAGAAAGTTGCTTTCATCCTTAAACCCTATTGCTCAGGAGAATTCCGTAACAGCGATGCTTAATCTATCAATATACGATCAGAACAAAAGCCGGATTATGAATGAAGAAGGGTGTTTAGGATCAATAGTTGAAGTTTTAAGATTCGGGCACACAACAGAGGCTAGAGAAAATGCAGCAGCAACATTGTTTAGCCTATCAGCTGTACACGATTACAAAAAGAGAATAGCAGATGAAGAAGGAGCAGTAGAAACCTTGGCTGGTTTATTAATAGAGGGTACACCTAGAGGGAAAAAAGATGCTGTAACAGCTCTATTCAATCTATCTACTCATACAGATAACTGCATGAGGATGGTGGGGTCTGGAGCAGTAACGGCACTAGTAGAAGCTTTAGGGAATGAAGGGGTTGCTGAAGAAGCAGCAGGTGGACTAGCCTTGATTGTTAGGCAGCCTATTGGCGCAGAAGCAGTAGCCAAAGAGGAAACTGCCGTTTCGGGTTTGATAGCAATGATGAGATGTGGGACTCCCCGGGGTAAGGAGCACGCGGTTGCAGCATTACTCGAGTTATGCCGGAGTGGTGGGGCCACTGCTACGGAAAGAGTTGTTAAGGTTCCAGCTTTGGCTGGGTTACTTCAAAGCTTGCTTTTTACGGGTACGAAAAGGGCTAGAAGAAAGGCTGCTTCTCTTGTTAGAGTTTTTCAAAGGTGTGAGAATCCTCGTATGAATTATGGTGGATTGAATGTGGGTTATGCATTTGCTGGAAACTTGGTTGCAAGTAGGTCCAGCTTTATTGCTACTGATATTTTTGTGCCCATCTCTATTTCCGAACCTGTTTTGTAG | 2148 | 42.88 | MASAAIFSSLRRQKSPSVVAFLAPVNLTDVALVHTLASVSTDLISCFSAASFFFQCKNSRSLIRKIEVLLVFLECLKESGQTLPPTGVLCFKEVYLLLYRSKMLLDYCSQSGKIWLLLQNHSISGHFHDLNLEISTLLDVFPFDEVELGLEVKEQIELLQKQSRRAELFIDKHDEVLRYQLFSFLDVFENGKIPNKEELQEFFVDKLGIRDAKSCRAEIEFLEEQIVNNNGDVEPTVSILNGFVSLTRYSRFLLFGFEEDELDLRNGNQKKLKRGLISQEIADTFITIPKDFCCPISLDLMKDPVIISTGQTYDRSSITRWMEAGHCTCPKTGQMVDLTRLIPNRALRNLIMQWSSAHGIPYDPPEGMDLSGEIFSSGCPTEAALGANRATAELLINELATGSQDGKTIAAREIRLLAKTGKENRAFIAEAGAIPYLRKLLSSLNPIAQENSVTAMLNLSIYDQNKSRIMNEEGCLGSIVEVLRFGHTTEARENAAATLFSLSAVHDYKKRIADEEGAVETLAGLLIEGTPRGKKDAVTALFNLSTHTDNCMRMVGSGAVTALVEALGNEGVAEEAAGGLALIVRQPIGAEAVAKEETAVSGLIAMMRCGTPRGKEHAVAALLELCRSGGATATERVVKVPALAGLLQSLLFTGTKRARRKAASLVRVFQRCENPRMNYGGLNVGYAFAGNLVASRSSFIATDIFVPISISEPVL | 715 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 11573290 | 11576044 | - | Conep05aG0169200.1 | Cone5ag1640 | 438658 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag1640 | 715 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 432 | 474 | IPR000225 | GO:0005515(InterPro) | |
Cone5ag1640 | 715 | Gene3D | - | 541 | 652 | IPR011989 | - | |
Cone5ag1640 | 715 | FunFam | RING-type E3 ubiquitin transferase | 364 | 686 | - | - | |
Cone5ag1640 | 715 | Pfam | Armadillo/beta-catenin-like repeat | 422 | 460 | IPR000225 | GO:0005515(InterPro) | |
Cone5ag1640 | 715 | SUPERFAMILY | RING/U-box | 276 | 362 | - | - | |
Cone5ag1640 | 715 | SMART | arm_5 | 506 | 546 | IPR000225 | GO:0005515(InterPro) | |
Cone5ag1640 | 715 | SMART | arm_5 | 547 | 585 | IPR000225 | GO:0005515(InterPro) | |
Cone5ag1640 | 715 | SMART | arm_5 | 421 | 461 | IPR000225 | GO:0005515(InterPro) | |
Cone5ag1640 | 715 | SMART | arm_5 | 463 | 504 | IPR000225 | GO:0005515(InterPro) | |
Cone5ag1640 | 715 | ProSiteProfiles | U-box domain profile. | 287 | 361 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone5ag1640 | 715 | SMART | Ubox_2 | 291 | 354 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone5ag1640 | 715 | CDD | RING-Ubox_PUB | 289 | 341 | IPR045210 | - | |
Cone5ag1640 | 715 | Gene3D | - | 380 | 540 | IPR011989 | - | |
Cone5ag1640 | 715 | Pfam | U-box domain | 288 | 358 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone5ag1640 | 715 | PANTHER | U BOX DOMAIN-CONTAINING | 55 | 672 | - | - | |
Cone5ag1640 | 715 | SUPERFAMILY | ARM repeat | 393 | 670 | IPR016024 | - | |
Cone5ag1640 | 715 | FunFam | RING-type E3 ubiquitin transferase | 286 | 361 | - | - | |
Cone5ag1640 | 715 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 287 | 362 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag1203 | Cone-Chr11:9100248 | Cone5ag1640 | Cone-Chr5:11573290 | 3.49E-109 | dispersed | |
Cone13ag1442 | Cone-Chr13:10325211 | Cone5ag1640 | Cone-Chr5:11573290 | 3.06E-18 | dispersed | |
Cone18ag0385 | Cone-Chr18:1865327 | Cone5ag1640 | Cone-Chr5:11573290 | 1.96E-108 | dispersed | |
Cone1ag0116 | Cone-Chr1:649753 | Cone5ag1640 | Cone-Chr5:11573290 | 1.53E-32 | dispersed | |
Cone1ag1367 | Cone-Chr1:56614275 | Cone5ag1640 | Cone-Chr5:11573290 | 4.79E-45 | dispersed | |
Cone2ag0897 | Cone-Chr2:34814135 | Cone5ag1640 | Cone-Chr5:11573290 | 1.58E-80 | dispersed | |
Cone5ag0357 | Cone-Chr5:1515471 | Cone5ag1640 | Cone-Chr5:11573290 | 2.20E-57 | dispersed | |
Cone5ag1640 | Cone-Chr5:11573290 | Cone7ag0984 | Cone-Chr7:7594941 | 2.06E-40 | dispersed | |
Cone5ag1640 | Cone-Chr5:11573290 | Cone10ag0439 | Cone-Chr10:2040814 | 2.54E-114 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag1640 | - | - | - | 0.0 |