Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1640 ATGGCGAGCGCGGCGATATTCTCGTCGTTAAGGAGGCAGAAATCGCCATCGGTGGTGGCATTTTTAGCTCCGGTTAATCTCACCGACGTTGCTCTTGTACATACCCTAGCATCAGTTTCCACTGACCTGATTTCATGCTTTTCCGCCGCGTCGTTTTTCTTCCAGTGTAAGAATTCACGGTCTCTTATACGCAAAATCGAGGTTCTTCTTGTGTTTCTGGAGTGTTTGAAGGAATCCGGCCAGACTTTGCCTCCGACGGGAGTGCTTTGTTTCAAGGAGGTTTATTTGTTGCTTTATCGGTCCAAGATGTTGCTTGATTATTGTTCTCAATCAGGTAAGATATGGCTATTGCTTCAAAACCACTCGATTTCAGGCCATTTTCATGATTTAAACCTAGAAATTTCAACTCTTTTGGATGTATTCCCATTTGATGAAGTTGAACTGGGGTTAGAGGTTAAGGAGCAGATTGAGCTTTTGCAGAAACAATCAAGAAGAGCAGAACTATTTATCGATAAGCACGATGAAGTGCTTAGATATCAACTCTTCTCATTTCTTGATGTTTTTGAAAATGGGAAGATCCCCAATAAGGAAGAATTGCAGGAGTTCTTTGTAGATAAATTGGGGATTAGAGATGCTAAGAGTTGCAGAGCTGAAATTGAGTTTTTGGAGGAACAGATTGTTAATAATAACGGAGATGTTGAGCCAACAGTCTCGATCCTAAACGGTTTTGTTTCACTGACAAGATATAGTAGGTTCTTACTTTTTGGATTTGAAGAGGATGAACTAGATTTGAGAAATGGAAACCAGAAGAAGCTGAAAAGGGGGTTGATATCTCAAGAAATTGCGGATACCTTTATAACGATTCCGAAGGACTTTTGCTGCCCAATATCATTAGATTTGATGAAAGACCCAGTAATAATTTCTACAGGACAAACATATGACAGAAGTTCAATCACAAGATGGATGGAAGCAGGTCATTGTACTTGCCCCAAAACCGGTCAAATGGTTGATTTAACCCGCCTCATTCCAAACCGAGCTTTAAGGAATCTGATCATGCAGTGGTCTTCGGCTCATGGAATTCCTTATGATCCACCGGAGGGTATGGATTTATCAGGTGAAATCTTTTCATCTGGTTGTCCCACAGAGGCTGCACTTGGAGCTAACCGAGCAACGGCTGAGCTTCTTATCAATGAGCTAGCAACTGGGTCTCAAGATGGAAAGACTATAGCTGCCAGAGAGATCCGTTTATTAGCCAAAACCGGAAAGGAAAACCGTGCCTTCATTGCAGAAGCCGGGGCTATCCCATATCTTAGAAAGTTGCTTTCATCCTTAAACCCTATTGCTCAGGAGAATTCCGTAACAGCGATGCTTAATCTATCAATATACGATCAGAACAAAAGCCGGATTATGAATGAAGAAGGGTGTTTAGGATCAATAGTTGAAGTTTTAAGATTCGGGCACACAACAGAGGCTAGAGAAAATGCAGCAGCAACATTGTTTAGCCTATCAGCTGTACACGATTACAAAAAGAGAATAGCAGATGAAGAAGGAGCAGTAGAAACCTTGGCTGGTTTATTAATAGAGGGTACACCTAGAGGGAAAAAAGATGCTGTAACAGCTCTATTCAATCTATCTACTCATACAGATAACTGCATGAGGATGGTGGGGTCTGGAGCAGTAACGGCACTAGTAGAAGCTTTAGGGAATGAAGGGGTTGCTGAAGAAGCAGCAGGTGGACTAGCCTTGATTGTTAGGCAGCCTATTGGCGCAGAAGCAGTAGCCAAAGAGGAAACTGCCGTTTCGGGTTTGATAGCAATGATGAGATGTGGGACTCCCCGGGGTAAGGAGCACGCGGTTGCAGCATTACTCGAGTTATGCCGGAGTGGTGGGGCCACTGCTACGGAAAGAGTTGTTAAGGTTCCAGCTTTGGCTGGGTTACTTCAAAGCTTGCTTTTTACGGGTACGAAAAGGGCTAGAAGAAAGGCTGCTTCTCTTGTTAGAGTTTTTCAAAGGTGTGAGAATCCTCGTATGAATTATGGTGGATTGAATGTGGGTTATGCATTTGCTGGAAACTTGGTTGCAAGTAGGTCCAGCTTTATTGCTACTGATATTTTTGTGCCCATCTCTATTTCCGAACCTGTTTTGTAG 2148 42.88 MASAAIFSSLRRQKSPSVVAFLAPVNLTDVALVHTLASVSTDLISCFSAASFFFQCKNSRSLIRKIEVLLVFLECLKESGQTLPPTGVLCFKEVYLLLYRSKMLLDYCSQSGKIWLLLQNHSISGHFHDLNLEISTLLDVFPFDEVELGLEVKEQIELLQKQSRRAELFIDKHDEVLRYQLFSFLDVFENGKIPNKEELQEFFVDKLGIRDAKSCRAEIEFLEEQIVNNNGDVEPTVSILNGFVSLTRYSRFLLFGFEEDELDLRNGNQKKLKRGLISQEIADTFITIPKDFCCPISLDLMKDPVIISTGQTYDRSSITRWMEAGHCTCPKTGQMVDLTRLIPNRALRNLIMQWSSAHGIPYDPPEGMDLSGEIFSSGCPTEAALGANRATAELLINELATGSQDGKTIAAREIRLLAKTGKENRAFIAEAGAIPYLRKLLSSLNPIAQENSVTAMLNLSIYDQNKSRIMNEEGCLGSIVEVLRFGHTTEARENAAATLFSLSAVHDYKKRIADEEGAVETLAGLLIEGTPRGKKDAVTALFNLSTHTDNCMRMVGSGAVTALVEALGNEGVAEEAAGGLALIVRQPIGAEAVAKEETAVSGLIAMMRCGTPRGKEHAVAALLELCRSGGATATERVVKVPALAGLLQSLLFTGTKRARRKAASLVRVFQRCENPRMNYGGLNVGYAFAGNLVASRSSFIATDIFVPISISEPVL 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11573290 11576044 - Conep05aG0169200.1 Cone5ag1640 438658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1640 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515(InterPro)
Cone5ag1640 715 Gene3D - 541 652 IPR011989 -
Cone5ag1640 715 FunFam RING-type E3 ubiquitin transferase 364 686 - -
Cone5ag1640 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515(InterPro)
Cone5ag1640 715 SUPERFAMILY RING/U-box 276 362 - -
Cone5ag1640 715 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Cone5ag1640 715 SMART arm_5 547 585 IPR000225 GO:0005515(InterPro)
Cone5ag1640 715 SMART arm_5 421 461 IPR000225 GO:0005515(InterPro)
Cone5ag1640 715 SMART arm_5 463 504 IPR000225 GO:0005515(InterPro)
Cone5ag1640 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone5ag1640 715 SMART Ubox_2 291 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone5ag1640 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
Cone5ag1640 715 Gene3D - 380 540 IPR011989 -
Cone5ag1640 715 Pfam U-box domain 288 358 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone5ag1640 715 PANTHER U BOX DOMAIN-CONTAINING 55 672 - -
Cone5ag1640 715 SUPERFAMILY ARM repeat 393 670 IPR016024 -
Cone5ag1640 715 FunFam RING-type E3 ubiquitin transferase 286 361 - -
Cone5ag1640 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1203 Cone-Chr11:9100248 Cone5ag1640 Cone-Chr5:11573290 3.49E-109 dispersed
Cone13ag1442 Cone-Chr13:10325211 Cone5ag1640 Cone-Chr5:11573290 3.06E-18 dispersed
Cone18ag0385 Cone-Chr18:1865327 Cone5ag1640 Cone-Chr5:11573290 1.96E-108 dispersed
Cone1ag0116 Cone-Chr1:649753 Cone5ag1640 Cone-Chr5:11573290 1.53E-32 dispersed
Cone1ag1367 Cone-Chr1:56614275 Cone5ag1640 Cone-Chr5:11573290 4.79E-45 dispersed
Cone2ag0897 Cone-Chr2:34814135 Cone5ag1640 Cone-Chr5:11573290 1.58E-80 dispersed
Cone5ag0357 Cone-Chr5:1515471 Cone5ag1640 Cone-Chr5:11573290 2.20E-57 dispersed
Cone5ag1640 Cone-Chr5:11573290 Cone7ag0984 Cone-Chr7:7594941 2.06E-40 dispersed
Cone5ag1640 Cone-Chr5:11573290 Cone10ag0439 Cone-Chr10:2040814 2.54E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1640 - - - 0.0