Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1644 ATGATGTCCAGATCGTATACAAATCTTTTAGATCTAGCTTCCGGAAACTTTCCGGTAATGGGCCGGGAAAAGAAACGGCTGCCTCGAGTAATGACGGTTCCAGGCGTCATTTCCGAGCTAGATGATGATCAAGCCAATAGTGTAACTTCAGATGCACCATCTTCTGCCGTTCAAGACCGAATAATTATCGTAGCAAATCAGTTACCTGTCAAAGCTAAGCGTAGGCCGGATAATAAAGGGTGGAGTTTCAGTTGGGACGAGGACTCCTTGTTATTACAGCTGAAAGATGGATTACCCGAAGATATGGAGGTTCTATACGTAGGCTCGTTAAGGGTCGATGTAGATTTGTCCGAACAAGATGATGTCTCTCAGCTTTTATTGGATCGGTTTAAGTGTGTTCCTGCTTTTTTACCGGCCGATATTTTGTCTAAATTCTACCATGGGTTTTGTAAACAACATTTATGGCCATTGTTTCATTACATGCTTCCTATTTCGGCTAGTCATGGAGGAAGGTTTGACCGTTCATTATGGGAATCTTATGTGGCGGCAAATAAGATCTTCTCGCAAAGGGTGATTGAGGTGATAAACCCGGAAGATGATTATGTTTGGATCCATGATTACCATTTAATGGTTCTTCCTACTTTCTTAAGGAGGAGGTTTAATAGATTGAGAATGGGGTTTTTCCTTCATAGCCCGTTTCCTTCTTCGGAAATATACAGGACTTTACCTGTAAGAGAAGAAATTCTAAAAGCCCTTTTAAATTCGGATCTTATTGGATTCCATACATTTGACTATGCCCGGCATTTTCTCTCTTGTTGTAGTAGAATGTTGGGTTTAGAGTATCAATCCAAAAGGGGCTATATTGGGTTGGAATATTATGGAAGAACCGTTGGGATTAAGATCATGCCTGTTGGAATCCACATGGGTCAGATCGAGACAGTTTTAAGACAAGCCGATAAGGAGTGGAGAGTAGGGGAGCTTAAACTACAATTTGAAGGAAAAACCGTTTTGCTTGGAGTAGATGATATGGATATTTTCAAAGGTGTTAATCTAAAGGTTTTGGCAATGGAGCAGTTATTAAAACAACACCCTAAATGGCAGGGAAGAGCCGTTTTGGTCCAAATTGCAAATCCGGCTCGAGGAAGTGGAAAGGATCTGGAGGAAATCCAGGAAGAAATCCATGCAAGTGTTAAGAGAATCAATGAGAGTTTTAGACGACCAAATTATGAACCCATTGTCTTCATCGACAGACCTGTTTCTTTAAGTGAAAGAGCTGCTTATTACACCATTGCAGAATGTGTTGTTGTAACAGCTGTGAGAGACGGAATGAATCTTACACCTTACGAGTATATAGTCTGTAGGCAAGGAATCTCTGAGGAATCTAGCCCAAAATCTAATGGTGTGAAAAAGAGCATGTTGGTAGTTTCAGAATTTATTGGATGCTCCCCTTCCTTAAGTGGGGCCATTAGGGTCAACCCATGGAACATAGAAGCAACGGCCGAGGCAATGAATGAGTCAATTTCAATGCCGGAGGGAGAGAAACAGTTAAGGCATGAGAAGCATTATAGATATGTTAGTACACATGATGTTGGGTATTGGTCCAAGAGCTTCTTCCATGACATGGAAAGGACATGTAAGGATCATTTCAGAAGAAGATGTTGGGGAATTGGGTTGAGCTTTGGGTTTCGTGTCGTGGCTTTGGACCCAAGTTTCCGGAAGCTGTCTACTGATGCCATTGTTTCAGCTTATTGTCGATCGAAGAATCGGGCTATACTTTTGGATTATGATGGGACTGTGATGCCCCAAACCTCAATTGATAAGAAACCTAGTTATGAGGTTATCTCGATCATTAATGAACTATGTAGCGATCTGAAAAATGCCGTTTTTGTTGTTAGTGGAAGAGGAAGGGAGAGTTTAGGGCAGTGGTTTGCTCCATGCAAGAAACTCGGGATTGCAGCTGAACATGGCTATTTTATCAGGTGGTCGGCAAATGAGGAGTGGGAAAATTGTGGGCAGAGTGGGGATTTTGGATGGATAGAGATGGCTAAGCCAGTTATGAATCTGTATACGGAGGCGACTGATGGGTCCTCCATTGAAACTAAGGAGAGTGCTTTGGTTTGGCACCATCGTGATGCAGACCCGGGTTTTGCGTCGTGCCAGGCTAAGGAGTTGCTGGACCATCTTGAAAGTGTTCTAGCCAATGAACCGGTTGCTGTCAAAGCCGGTCAGTTTATTGTTGAAGTAAAGCCACAGGGTGTGAGCAAAGGCTTAGTTGCTGAAAGGATATTCACTAAACTAGCTGAGAATGGAAGGCAGGCTGATTTCATCCTTTGTATAGGGGACGATAGATCGGACGAAGAAATGTTTGAGATCATAGGTAGTGCAATGGCAAGTGGGACCCTCTCTTCCAACACATCAGTTTTTGCCTGCACCGTCGGACAAAAACCAAGCAAGGCAAAGTACTACTTGGACGATACAACAGAAGTAATTAACATGCTCGAAGCCCTAGCAGAAGCTTCCGATCCCTCTTCACCCCCAGAGTCCCCTTGA 2550 43.1 MMSRSYTNLLDLASGNFPVMGREKKRLPRVMTVPGVISELDDDQANSVTSDAPSSAVQDRIIIVANQLPVKAKRRPDNKGWSFSWDEDSLLLQLKDGLPEDMEVLYVGSLRVDVDLSEQDDVSQLLLDRFKCVPAFLPADILSKFYHGFCKQHLWPLFHYMLPISASHGGRFDRSLWESYVAANKIFSQRVIEVINPEDDYVWIHDYHLMVLPTFLRRRFNRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYYGRTVGIKIMPVGIHMGQIETVLRQADKEWRVGELKLQFEGKTVLLGVDDMDIFKGVNLKVLAMEQLLKQHPKWQGRAVLVQIANPARGSGKDLEEIQEEIHASVKRINESFRRPNYEPIVFIDRPVSLSERAAYYTIAECVVVTAVRDGMNLTPYEYIVCRQGISEESSPKSNGVKKSMLVVSEFIGCSPSLSGAIRVNPWNIEATAEAMNESISMPEGEKQLRHEKHYRYVSTHDVGYWSKSFFHDMERTCKDHFRRRCWGIGLSFGFRVVALDPSFRKLSTDAIVSAYCRSKNRAILLDYDGTVMPQTSIDKKPSYEVISIINELCSDLKNAVFVVSGRGRESLGQWFAPCKKLGIAAEHGYFIRWSANEEWENCGQSGDFGWIEMAKPVMNLYTEATDGSSIETKESALVWHHRDADPGFASCQAKELLDHLESVLANEPVAVKAGQFIVEVKPQGVSKGLVAERIFTKLAENGRQADFILCIGDDRSDEEMFEIIGSAMASGTLSSNTSVFACTVGQKPSKAKYYLDDTTEVINMLEALAEASDPSSPPESP 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11621706 11625689 - Conep05aG0169600.1 Cone5ag1644 438662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1644 849 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Cone5ag1644 849 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 718 848 - -
Cone5ag1644 849 FunFam Alpha,alpha-trehalose-phosphate synthase 314 526 - -
Cone5ag1644 849 SUPERFAMILY HAD-like 589 837 IPR036412 -
Cone5ag1644 849 Pfam Glycosyltransferase family 20 60 542 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone5ag1644 849 CDD HAD_TPP 590 831 - -
Cone5ag1644 849 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 588 705 - -
Cone5ag1644 849 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 839 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cone5ag1644 849 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 546 - -
Cone5ag1644 849 CDD GT20_TPS 60 542 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone5ag1644 849 Gene3D - 588 685 IPR023214 -
Cone5ag1644 849 Gene3D - 709 845 IPR023214 -
Cone5ag1644 849 NCBIfam HAD-IIB family hydrolase 591 795 IPR006379 -
Cone5ag1644 849 Pfam Trehalose-phosphatase 592 826 IPR003337 GO:0005992(InterPro)
Cone5ag1644 849 Gene3D Glycogen Phosphorylase B; 314 526 - -
Cone5ag1644 849 NCBIfam trehalose-phosphatase 586 837 IPR003337 GO:0005992(InterPro)
Cone5ag1644 849 Gene3D Glycogen Phosphorylase B; 53 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1362 Cone-Chr10:10609845 Cone5ag1644 Cone-Chr5:11621706 0 dispersed
Cone2ag0608 Cone-Chr2:3682922 Cone5ag1644 Cone-Chr5:11621706 0 dispersed
Cone3ag1433 Cone-Chr3:33088889 Cone5ag1644 Cone-Chr5:11621706 0 dispersed
Cone5ag1644 Cone-Chr5:11621706 Cone8ag0594 Cone-Chr8:5022593 0 dispersed
Cone1ag0222 Cone-Chr1:1385340 Cone5ag1644 Cone-Chr5:11621706 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1644 K16055 - rcu:8275177 1528.84