Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1648 ATGGATTCTAGCTTCAATTACAATCACCACAGCCTGTTCTTCATGAATGATTTTGATCATCATCAACAAGAAGAAAAAAGTGGATCTGAATCTCCTCCTTCCACGGCCAACTTAAACAATCATCATCACTACACCTCCAAGCTCATTCCCTCCTCCTCCCCCTCCAAAAAGAGCAGGAGAGGGATACAGAAAAGAGTGGTGACAGTGCCAATGAAGGAGGTAGAAGGATCAAGGCTTAAGGGTGAAATAAGCAACAATGGTCCTCCTTCTGATTCTTGGGCTTGGAGAAAGTACGGTCAAAAACCCATCAAAGGGTCCCCTTATCCCAGAGGTTATTACAGATGTAGTAGCTCAAAGGGCTGCCCAGCAAGGAAACAAGTCGAAAGGAGCCGAGTGGACCCCACTCTTTTACTCATCACTTACTCAGCCGAACACAACCATCCTGGTCCCACTTCTAGAAACAACAACACCCACCACTCCTCCTCCTCCGCAGTGTCCGCCGTCACCGCCGCCGCCAGCAGACCTACTTGCAAGACTCAAACTATTAACAATAACAACAACAACAACGGAATACCCGACCCGGTACCGCAGCATGAGGAGAAATTCGCGGATCTAGGCGACGAGTCGTTGATCGTCACGTGCGATGAGTTCAGCTGGTTTAGAGACATGGAAACTACGTCGTCTACAATACTGGAGTGTCCCATTTTCGCGGAAGAGAGAAACGCGTTTTTCCCGATGAGGGAAGAGGACGAGTCGCTCTTCGCCGATCTGGGCGAGTTGCCAGAGTGCTCAATCGTATTGCGAAGCGGTGGGCCCACAGATAGAGACGTGGACCCGCGACCCCATTATGTGGGACCACGAGCTGAGATCCTCGGACACGTGTCCTTTTGA 891 50.17 MDSSFNYNHHSLFFMNDFDHHQQEEKSGSESPPSTANLNNHHHYTSKLIPSSSPSKKSRRGIQKRVVTVPMKEVEGSRLKGEISNNGPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTLLLITYSAEHNHPGPTSRNNNTHHSSSSAVSAVTAAASRPTCKTQTINNNNNNNGIPDPVPQHEEKFADLGDESLIVTCDEFSWFRDMETTSSTILECPIFAEERNAFFPMREEDESLFADLGELPECSIVLRSGGPTDRDVDPRPHYVGPRAEILGHVSF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11645503 11647471 - Conep05aG0170000.1 Cone5ag1648 438666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1648 296 Gene3D WRKY domain 77 151 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag1648 296 Pfam WRKY DNA -binding domain 91 148 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag1648 296 MobiDBLite consensus disorder prediction 144 164 - -
Cone5ag1648 296 MobiDBLite consensus disorder prediction 28 57 - -
Cone5ag1648 296 ProSiteProfiles WRKY domain profile. 84 150 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag1648 296 FunFam WRKY transcription factor 65 76 150 - -
Cone5ag1648 296 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 23 264 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone5ag1648 296 MobiDBLite consensus disorder prediction 145 164 - -
Cone5ag1648 296 SUPERFAMILY WRKY DNA-binding domain 85 150 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag1648 296 MobiDBLite consensus disorder prediction 21 64 - -
Cone5ag1648 296 SMART WRKY_cls 89 149 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0698 Cone-Chr11:4763548 Cone5ag1648 Cone-Chr5:11645503 6.10E-33 dispersed
Cone18ag0749 Cone-Chr18:4125359 Cone5ag1648 Cone-Chr5:11645503 3.25E-29 dispersed
Cone5ag1648 Cone-Chr5:11645503 Cone6ag1143 Cone-Chr6:8641222 8.65E-38 dispersed
Cone1ag0219 Cone-Chr1:1359210 Cone5ag1648 Cone-Chr5:11645503 1.46E-142 wgd
Cone5ag1648 Cone-Chr5:11645503 Cone8ag1525 Cone-Chr8:11488264 6.09E-40 wgd
Cone5ag1648 Cone-Chr5:11645503 Cone9ag0947 Cone-Chr9:4708149 1.73E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46230 PF00107 ADH_zinc_N 3.20E-10 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1648 - - - 0.0