Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1652 ATGGCGGATGAATTCAAAAAGAACAGCGGCAGCAAGAAGGAATTTCAGTCTCTTCTCTTAGGTCGGTACGAGGTCGGGAAGCTTCTCGGCCATGGAACCTTTGCAAAAGTCTACCACGCTCGGAACGTAAAATCGAACGAAAGCGTAGCGATCAAGGTCATCGACAAGGAGAAGATCTTGAAAGGAGGTCTAATTGCTCACATCAAGCGCGAGATCTCGATTCTCCGCCGTGTTCGTCATCCGAACATAGTCCACCTCTTCGAGGTCATGGCTACGAAGGCCAAGATTTACTTCGTCATGGAGTACGTTCGCGGCGGCGAACTTTTCAAGAAGGTCGCGAAAGGTCGGTTGAAGGAAGAACTAGCTCGGAAATACTTTCAGCAATTGATCTCCGCCGTCGGATTCTGCCACGCTCGCGGCGTTTACCACCGCGACCTGAAGCCGGAAAACCTCTTGCTCGACCTAAATGGCGATCTGAAAGTCTCCGATTTCGGACTTAGCGCCGTATCAGATCAGATTCGTCAAGACGGCTTGTTCCATACATTTTGCGGCACCCCGGCTTACGTTGCGCCTGAGGTCCTAGCTCGACGAGGCTATGAAGCTGCTAAGGTAGATATCTGGTCCTGTGGAATCGTTCTATTTGTTCTTATGGCTGGCTATTTACCTTTCCAGGACCAGAATATCATGGCAATGTATAAGAAAATCTACAAAGGCGAATTCAGGTGCCCTAAATGGTTCTCACCAGACCTGACTCGGCTCCTAACTCGCCTTCTCGATACGAATCCTGAAACCAGAATCACAATCCCTGAAATTATGGAAAACAGATGGTTCAAAAAAGGGTTTAAGCATATAAAATTCTATATAGAGGATGATAAGCTCTGTAATGTTGCGGATGATGATGACGATTCTTTATCCGAAAAATCTTTATCCGAATCGGATTCAGAACCTGAGCCAAGGAGGAGGATTAATACTTCCTTGCCTAGACCGACTAGTTTAAACGCATTTGATATAATATCCTTTTCGCCTGGTTTTGATCTTTCTGGTTTGTTTGAAGATGGGGGAGAGGAAGCTAGGTTTGTTTCAGGTGCACCCGTATCCGAAATTATATCGAAATTAGAGGAGATTGCAAAAGTAGTGAGCTTTACAGTGAGGAAGAAGGATTGTAGAGTGAGCTTGGAAGGGTCAAGAGAAGGGGTAAAGGGGCCATTAACAATTGCAGCTGAGATTTTCGAGTTAACACCTGAATTGGTAGTTGTAGAGGTGAAGAAGAAAGGAGGGGATAAATCAGAGTATGAACAATTCTGTAATGCAGAATTGAAGCCTGGATTGCAGAATTTGATACTCGAAAAGTCTCCCTCGTCGTCACGCTTGATTTCTGATACTGAATAG 1389 45.5 MADEFKKNSGSKKEFQSLLLGRYEVGKLLGHGTFAKVYHARNVKSNESVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVHLFEVMATKAKIYFVMEYVRGGELFKKVAKGRLKEELARKYFQQLISAVGFCHARGVYHRDLKPENLLLDLNGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARRGYEAAKVDIWSCGIVLFVLMAGYLPFQDQNIMAMYKKIYKGEFRCPKWFSPDLTRLLTRLLDTNPETRITIPEIMENRWFKKGFKHIKFYIEDDKLCNVADDDDDSLSEKSLSESDSEPEPRRRINTSLPRPTSLNAFDIISFSPGFDLSGLFEDGGEEARFVSGAPVSEIISKLEEIAKVVSFTVRKKDCRVSLEGSREGVKGPLTIAAEIFELTPELVVVEVKKKGGDKSEYEQFCNAELKPGLQNLILEKSPSSSRLISDTE 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11710174 11712274 + Conep05aG0170500.1 Cone5ag1652 438670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1652 462 SMART serkin_6 23 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1652 462 Gene3D Kinase associated domain 1, KA1 329 449 - -
Cone5ag1652 462 Gene3D Transferase(Phosphotransferase) domain 1 13 326 - -
Cone5ag1652 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1652 462 ProSiteProfiles Protein kinase domain profile. 23 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1652 462 FunFam Non-specific serine/threonine protein kinase 13 317 - -
Cone5ag1652 462 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 440 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone5ag1652 462 SUPERFAMILY Protein kinase-like (PK-like) 19 289 IPR011009 -
Cone5ag1652 462 FunFam Non-specific serine/threonine protein kinase 14 102 - -
Cone5ag1652 462 Pfam NAF domain 329 385 IPR004041 GO:0007165(InterPro)
Cone5ag1652 462 CDD CIPK_C 333 444 - -
Cone5ag1652 462 FunFam Non-specific serine/threonine protein kinase 329 447 - -
Cone5ag1652 462 ProSiteProfiles NAF domain profile. 327 351 IPR018451 GO:0007165(InterPro)
Cone5ag1652 462 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524(InterPro)
Cone5ag1652 462 MobiDBLite consensus disorder prediction 301 327 - -
Cone5ag1652 462 MobiDBLite consensus disorder prediction 301 322 - -
Cone5ag1652 462 Pfam Protein kinase domain 23 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1046 Cone-Chr5:4578612 Cone5ag1652 Cone-Chr5:11710174 6.33E-154 dispersed
Cone5ag1652 Cone-Chr5:11710174 Cone7ag0077 Cone-Chr7:332438 6.54E-169 dispersed
Cone5ag1652 Cone-Chr5:11710174 Cone5ag1653 Cone-Chr5:11714681 5.78E-174 tandem
Cone1ag0212 Cone-Chr1:1285445 Cone5ag1652 Cone-Chr5:11710174 1.37E-304 wgd
Cone5ag1652 Cone-Chr5:11710174 Cone6ag0951 Cone-Chr6:4980591 1.21E-271 wgd
Cone5ag1652 Cone-Chr5:11710174 Cone9ag0959 Cone-Chr9:4798124 9.68E-272 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82891 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1652 - - - 0.0