Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1653 ATGGAGAAGAAAGGAACCATTTTGATGCATAGATATGAGATTGGAAGAATGCTAGGGCAAGGGACTTTTGCCAAAGTCTACCATGCCCGTAACTTGATATCGGGTCATAGCGTCGCCATTAAAGTCATTGACAAAGAGAAGGTTCTACGTGTCGGAATGATTGACCAAATCAAACGGGAGATCTCCGTTATGCGACTTGTTAGACACCCTAATGTCGTTCAACTTTATGAGGTCATGGCAAGCAAAACAAAGATCTATTTTGCCATGGAGTATGTCAAAGGTGGTGAGCTTTTCAACAAGGTTGCTAGAGGAAAGCTTAAGGAAGATTCCGCCCGTAAATATTTCCAACAATTAATCGGGGCAATTGATTATTGTCATAGCCGTGGGGTCTACCACCGTGATTTGAAGCCCGAGAATCTTCTTCTAGATGATAGTGGCAACCTAAAAGTCTCGGATTTCGGTTTAAGCGCTTTGTGTGAATCAAGAAGGAAAGATGGCCTTCTTCATACGACTTGTGGAACTCCAGCTTATGTTCCACCTGAAGTAATTAACAAAAAGGGTTATTGTGGTGCCAAAGCTGATATTTGGTCATGTGGGGTTGTTCTTTTTATTCTTCTAGCTGGTTATCTCCCATTCCATGATTCAAATCTTATGCAATTGTATAGAAAAATCAGCAACGGAGGATTTAAATGCCCGAATTGGTTTCCTCCCGATGTCCGTAAGCTTCTCTCCAAAATTCTCGATCCGAATCCCAGCACAAGAATTGACGTAACAAAAATCATGGAAAATGTTTGGTTCAAAAAGAATTTCAAGCCAATTGAAGAAGCTTCATTAATAGCGTTCCCCCAAGATGATGACCATCATCATGTTAATGAGGAAAATACCTTAATCAACGAAGTTGATGCTGCTTTTGATAATCGATCATCAACTAGTGAAGAATCTTCTCTGAAGTCGGCTAAAAGTACTATTAAAAATGATAGTAATAATTCAATGAAACCCTCATGTTTCAATGCATTCGATATTATATCTCTTTCACCCGGGTTCAACTTATCCGGATTATTCGAGCAAGACATGAATCAAAAGCCTCAAAGCCGGTTCACAACAACAAAACCCGCCTCGGCAATCGTGTCAAAGTTCGAAGAGATAGCAAAGGTGGAGAGGTTCAAGTTGATGAAAAGAGATGGGAAAGTGAAGATGCAAGGTAGCAAGGTAGGAAGAAAGGGGCAGCTTACTATAGATGCTGAAATATTTGAAGTAACACCTTCTTTTTATGTGGTAGAGATGACAAAAACGGCGGGTGATACCTTAGAATATAGGAAACTTTATAACCAAGGTTTGAAGCCTTCTCTTAATGATATTGTTTGGGCTTGGGAGGGAAGTGGCTTACAACAAGAAACACAACCAAAGCCGAATGGGGTGTAG 1422 40.37 MEKKGTILMHRYEIGRMLGQGTFAKVYHARNLISGHSVAIKVIDKEKVLRVGMIDQIKREISVMRLVRHPNVVQLYEVMASKTKIYFAMEYVKGGELFNKVARGKLKEDSARKYFQQLIGAIDYCHSRGVYHRDLKPENLLLDDSGNLKVSDFGLSALCESRRKDGLLHTTCGTPAYVPPEVINKKGYCGAKADIWSCGVVLFILLAGYLPFHDSNLMQLYRKISNGGFKCPNWFPPDVRKLLSKILDPNPSTRIDVTKIMENVWFKKNFKPIEEASLIAFPQDDDHHHVNEENTLINEVDAAFDNRSSTSEESSLKSAKSTIKNDSNNSMKPSCFNAFDIISLSPGFNLSGLFEQDMNQKPQSRFTTTKPASAIVSKFEEIAKVERFKLMKRDGKVKMQGSKVGRKGQLTIDAEIFEVTPSFYVVEMTKTAGDTLEYRKLYNQGLKPSLNDIVWAWEGSGLQQETQPKPNGV 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11714681 11716102 - Conep05aG0170600.1 Cone5ag1653 438671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1653 473 Pfam NAF domain 333 392 IPR004041 GO:0007165(InterPro)
Cone5ag1653 473 ProSiteProfiles NAF domain profile. 331 355 IPR018451 GO:0007165(InterPro)
Cone5ag1653 473 FunFam Non-specific serine/threonine protein kinase 6 312 - -
Cone5ag1653 473 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Cone5ag1653 473 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 444 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone5ag1653 473 Gene3D Transferase(Phosphotransferase) domain 1 3 333 - -
Cone5ag1653 473 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Cone5ag1653 473 SUPERFAMILY Protein kinase-like (PK-like) 8 327 IPR011009 -
Cone5ag1653 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1653 473 CDD CIPK_C 337 451 - -
Cone5ag1653 473 MobiDBLite consensus disorder prediction 306 327 - -
Cone5ag1653 473 FunFam Non-specific serine/threonine protein kinase 331 455 - -
Cone5ag1653 473 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1653 473 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1653 473 CDD STKc_SnRK3 11 265 - -
Cone5ag1653 473 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1653 473 Gene3D Kinase associated domain 1, KA1 334 456 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1653 Cone-Chr5:11714681 Cone7ag0077 Cone-Chr7:332438 3.58E-181 dispersed
Cone5ag1652 Cone-Chr5:11710174 Cone5ag1653 Cone-Chr5:11714681 5.78E-174 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82892 PF00854 PTR2 1.00E-53 CL0015 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1653 K07198 - vvi:100258329 686.797