Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1688 ATGGAGGTTGACGGCGGTTCAGAAGGCGAAGATCATAAGCCGAATGTTAACAATAATCATAGCAACAAAATCAGTAACTCGAATGAAGGTTATAGCAAGCCGAAGCGGCAGATGAAAACTCCCTTTCAGCTTGAAACTCTTGAGAAAACCTATGCCTTGGATACGTATCCAGCGGAGTCGGTTAGGGCTGAACTATCCGAGAAATTAGGACTTTCCGACCGGCAATTACAGATGTGGTTTTGTCACAGAAGATTGAAGGACAAGAAGGATGGTCCGGCAAAGAAACAGCGGAAGATGCCGGACACACCGCCACCGCCCACGCCTGATTCTCCTATTGATGACTTTAGAATAGAGGCTGAGCGTGTTAGTGACTATGGATCAGGGTCTGGTCCCGGATCGAGTCCGGTTGGTCATATGGAGATGCGTAACGCAATGCATATGGGTGTAGGAGATGATACGTTGATGGGGAGAAGGTATTATGAGCCTTCACAATCTGTAATAGAGGTTAAAGCTATTGCTTGTGTGGAGGCACAGTTGGGAGAGCCATTGAGAGAAGATGGACCAATTCTTGGCATTGAGTTTGATCCATTACCGCCTGATGCATTTGGAGCACCTATATCTGTAGAGCACCATAAGCGCTCTGGAATTCCTTATGAGGGAAAAGTATACGAACAACGCGAGGCAAGTTCAAAGAAGGCTGCTCCAAGAGTATTCCACAAATATCCATTTCTTCAAGACCAATCCAGCAGTCGGCCTGATATATATGGACACCTTCCCCAATCACATTTTCCTAATTCGATTGGTGAAGTTCCCTCGGCTGGGGCAACACCTTTCTTTCATGGTAATGAACAGCTGACCAGAGACCATGGTTTCCATGGGCATGTATCACGTGTTCGTGTTTTGTCGCAACAAGAAAAGCATGGAGTCAAGGTTTCTTCGCCTGCTAGAGATGATGACCATAGAAACGTTAGAACAAATGGTCAATTTATGGACATTCCACAATCTGGACCAGAACATCCATATGTATTGTCTGATGGGCATAAAATTGAAACTGATTCTATTATGCGGATGGAGAGGAAGCGCAAGAGTGGAGACCCTAGAAACGCTAGAGAAGCTGAAGCCAATGAAATACGAATCCGAAGGGAGCTTGAGAAACAAGATATGCTTAGGAAAAAGAGTGAAGAACGAATGAAGAAAGAAATGGAAAGGCAAGAAAATGAAAGAAAGAAGGAAGAAGAGAGGCTACTACGTGAAAGGCAGAGAGAATTGGAAAGATTGAAACGTGAAGAAAGACGGGAAAACGAACGAAGGGAAAAAATCATGCAGAAAGAACATTTAAGAGCAGAGAAAATGAGGCAAAAAGAAGCTCTACGCATAGAGAGAGAGGCAGTGAGACGCAAAGCAGCAATTGAGAAGGCCACTGCGCGTAGGATTGCTAGAGAATCTATGGAGCTTATTGAGGATGAGCAGCTGGAACTGATGGAGCAGGCTGTTGCAAGCAAGGAATTGTCCTCAATAATCTGTCTAGACCATGACACCTTGCAGAACCTTGAATCATTCCAAGGTTTTCTTGGTTCATTCCCTCCTAAGTCTGTGCGAATGAAAAAACCATTTGGTATTGAACCATGGAGTAATTCAGAGGAGAATGTGGGAAACCTTCTCATGGTTTGGAGTTTTTTGATAACATTCTCTGACATTCTAGAGCTGTGGCCGTTTACCCTAGATGAGTTCGTTCAATCTTTCCACGACCACGAGTCGAGACTGTTGGCCGAGATTCATGTTTCCCTTCTGAGGTTGATAATAAAAGATGTTGAAGATGTTGCGAGGACACCTTCAACTGGATTGGGGATGAATCAGAATGGTTCTGCCAATCCTGGTGGTGGGCATCTGCAGATTGTCGAAGGGGCATATGCATGGGGCTTTGACATTCGCAATTGGCAGCAGCACTTAAATCCTTTAACATGGCCTGAAATATTCCGACAATTAGCACTTTCGGCTGGAATTGGGCCACAGTTGAAGAAAAGGAGTGTTGCATGGTCTGATGTGCATGATAAAAATGAGGGTAAAGGTTGTGAAGATATAATTTCTACTCTCCGCAATGGTTCAGCAGCTGAAAATGCATTTACAGTTATGCAAGAGAAAGGTTTATTAGCTCCACGAAAATCTAGGCATCGGCTGACCCCTGGAACTGTCAAATTTGCAGCTTTTCATGTTCTTTCCCTTGAGGGAAGCAAGGGATTAACAGTATTAGAACTTGCAGACAAGATTCAGAAATCTGGACTTAGAGACCTGACCACAAGTAAGACCCCAGAGGCCTCAATATCTGTTGCTTTGACAAGGGATACAAAGCTTTTTGAAAGGATAGCTCCTTCTACATATCGTGTACGATCACCTTATAAAAAGGATCCTAATGATGCTGAAGAGATACTTTCAGAAGCCAGAAAGAAAATTCAGATATTTCAAAATGGTGTTTTAGCTGAAGAATATGTCAACGATGTGGAAAGAGATGAAGAATCTGAATGTGAGGATGTTGATGATGATCCTGAAGTTGATGATTTAGCTATCCCTTCTTTAGCAGACAAAGAGGCTAATAATACTAATGAAGCAGATACTCACTTGGAAAGTGGGAGAGAGAACTTTTCATGTGATCTTTCACCACCTCCAGAAAATCAATTTGTTAAGGACTTTTCATTGTTTCCCTTGAGTGGTCCCAAGGATCCAAACTATCCAAGCATTGCCACAGAGGAATACACTCCTGTTGATGATATAACTGCTAGTAATCCTGATCAAGAAAATATGGAGATTGATGATAGCAAGGCAGGTGAATCATGGGTTCAGGGTCTTACAGAAGGGGATTATTATGATCTCAGTGTAGAGGAGCGCTTAAATGCTCTAGTCGCATTAACAGGCATTGCAAACGAAGGAAACTCTATTCGAATTGTTCTTGAGGAACGATTGGAAGCAGCAAATGCTCTAAAGAAGCAGATGTGGGCAGAGGCACATCTAGATAAAGGTCGCTTGAGAGAAGAGACTATAACTAGATCCGATTTCCTATCTTTCGCAGGGAGTAAACCTGAAACACAACTTAATACCCCTTCTTTGGAGGGTGGCCAAAGCCCAACACCTGAGAGTGAAAATATAAAGAGTGAGGTGTCGCCAAGCCCTGCAGAAAACCAAAAGTTACTCAATGATCCACAAAGTATGCATAATCACTCCACCAGTGTGCCTGGTGAAAGGGTCTCCTCTGTATTGCAAGATTTTTCCACCGGCCCTGATAGCTTCCTGGTCCAGCAACTTGGAAATGCTTCAAAAAGGTCAAGGTCACAGTTAAAATCTTATATCTCCCATAGGGCTGAAGAGATGTACATATACAGGTCCTTGCCTCTTGGCCGAGATCGCAGGCGTAACCGGTACTGGCAGTTTGTTGCCTCTGCTTCAAGCAATGATCCTGGCTCTGGAAGGATCTTTATTGAATTGCATGATGGACATTGGAGGCTTATTGATACGGAAGAGGCCTATGATGCTCTATTGATGTCCTTGGACACACGAGGGATAAGAGAATCTCATCTACGCTTAATGTTGCAAAAGATCGAGTCATCCTTCAAGGCGAATTTTAAAAAGACTCTGCAATGTCGTAATACTGTTGTCCAAAGTTGGATTGGTGTTAAAAGTGAAGCTGATGAAATGGGTTCAAGCCCTGTCTGCCCTGCTACCTCAGACAGTCCTTGCAGTACTGTTTGTGGCTCAAGCAACGATACAATGGTCGCCTCATCTTCATTCAGGGTTGAACTTGGGAGAAATGAAACTGAGAAAAAGGCTGCCTTCAAAAGGTATCAAGAATTTCAGAGGTGGAGTTGGAAAGAATGCTTCAATTCATCAACATTAGGTGCCATGAAATATGGGAAAAAGAGGTGCAAACAGCTCTTGGACATTTGTGGCTCCTGTCTCAGTTTGTACAGCTCTGAACATTCACACTGCCTCTCTTGCCGTCAAACTGTTGGAATCATTAGTAATGACTTTGACTCTTCGGAACATGGGGTTCCATTTCAGGAGGAAAGTAAATCAAACAATTGTGATGTCAATAGTCTAAATTCTTCTCTTCCCCTTGGTAGAAGGTTGCTCAAGGCCCTGTTATCTTTCATTGAGGCATCTGTACCATCAGAAGCGCTTCAATCATTGTGGACAGAAGAATGTAGAAAGACTTGGGGTGTGAAGTTACACATGTCACCGCACACTGACGAACTTCTACAGCTATTGACTCTATTTGAGGGTGTGTTCAAGCGAGATTTTTTGTCATCAAAGTATGCTGCAACAGAGGAGATTTTAGGATCCCAAGTACATGATCCTACAGATGCTGGTTCTATTCTTGTACTACCATGGATACCTCAAACTAGTGCAGCTGTGGCTTTAAGGCTCTTTGAGCTAGATGCATCAATTATATACGTGCCATGTGAGAAGCCTAAGTGTGGTCCAGACGATGAAAGTGGAGGAGAATATCGGAAGTTTCCTATTAGAAATAATACTCTTGTGAAGAATGAAAGAGGAGAGAATGAGCCGACTGAATTAGGATTCGAAGAACCATTGAAGGAACAAAGCTATGTCGACTTGAAAAATGCCCGGAACAGCTATAAACGTGGTGGGCGAGGGAATCGTGACCAGGCTCGTAGCAAAAAACTGCAGAAAAGAAACAACGGGTCCAAGTCTGTTTCTGCTCGAAAAAATCATAAGGGCAGTGAAAAACTGAGTCAAGGATTTAGTAGTAGACCTCTCGGCCAAGGAACAACAACACAAGTACAAGGCCCTAGGAGTCGTAGAACTATTAGGAGGAGAGAAGAGATGAGAGCTCCTCAGGAAACCTTGTTCGGCCGAACATCCCTTGCACCTACTTATCAAGATATAGGTGAATCCCTAAAAGAATCTCTTAGCGCAGAATGGGATGATGAAAATATCAGTAACGCAGCCGTTCATATGAAGAATGATGATGATATAAACAATGTGGAAGCAATGGATTCTGATGATGATGATGATGATGTGGTGCATGCAGTAGGATATGATCAGGAGAACTGGGAGCTAAGTTATAACCGTGCATCTGATGGCTGGAACGAGGATGTAATAGGAGCAAGCGATGAGAATGTGGATGTATCCGAAGATGATAATGACATGGTGGAAGAGGAGGTAGTGGTAGGAGGTGAAGAAGATTCAGAAGAAGAGGATGGAGATATGAGTGAAGAGGAGGAAGAATCTGATGGAGTAATACCAACTAGGCCGAGAAATGGTGAAGATGATATAGAATCAGCTGGTTCCGAGGATTACAGTGATGACGATTAA 5328 43.3 MEVDGGSEGEDHKPNVNNNHSNKISNSNEGYSKPKRQMKTPFQLETLEKTYALDTYPAESVRAELSEKLGLSDRQLQMWFCHRRLKDKKDGPAKKQRKMPDTPPPPTPDSPIDDFRIEAERVSDYGSGSGPGSSPVGHMEMRNAMHMGVGDDTLMGRRYYEPSQSVIEVKAIACVEAQLGEPLREDGPILGIEFDPLPPDAFGAPISVEHHKRSGIPYEGKVYEQREASSKKAAPRVFHKYPFLQDQSSSRPDIYGHLPQSHFPNSIGEVPSAGATPFFHGNEQLTRDHGFHGHVSRVRVLSQQEKHGVKVSSPARDDDHRNVRTNGQFMDIPQSGPEHPYVLSDGHKIETDSIMRMERKRKSGDPRNAREAEANEIRIRRELEKQDMLRKKSEERMKKEMERQENERKKEEERLLRERQRELERLKREERRENERREKIMQKEHLRAEKMRQKEALRIEREAVRRKAAIEKATARRIARESMELIEDEQLELMEQAVASKELSSIICLDHDTLQNLESFQGFLGSFPPKSVRMKKPFGIEPWSNSEENVGNLLMVWSFLITFSDILELWPFTLDEFVQSFHDHESRLLAEIHVSLLRLIIKDVEDVARTPSTGLGMNQNGSANPGGGHLQIVEGAYAWGFDIRNWQQHLNPLTWPEIFRQLALSAGIGPQLKKRSVAWSDVHDKNEGKGCEDIISTLRNGSAAENAFTVMQEKGLLAPRKSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYRVRSPYKKDPNDAEEILSEARKKIQIFQNGVLAEEYVNDVERDEESECEDVDDDPEVDDLAIPSLADKEANNTNEADTHLESGRENFSCDLSPPPENQFVKDFSLFPLSGPKDPNYPSIATEEYTPVDDITASNPDQENMEIDDSKAGESWVQGLTEGDYYDLSVEERLNALVALTGIANEGNSIRIVLEERLEAANALKKQMWAEAHLDKGRLREETITRSDFLSFAGSKPETQLNTPSLEGGQSPTPESENIKSEVSPSPAENQKLLNDPQSMHNHSTSVPGERVSSVLQDFSTGPDSFLVQQLGNASKRSRSQLKSYISHRAEEMYIYRSLPLGRDRRRNRYWQFVASASSNDPGSGRIFIELHDGHWRLIDTEEAYDALLMSLDTRGIRESHLRLMLQKIESSFKANFKKTLQCRNTVVQSWIGVKSEADEMGSSPVCPATSDSPCSTVCGSSNDTMVASSSFRVELGRNETEKKAAFKRYQEFQRWSWKECFNSSTLGAMKYGKKRCKQLLDICGSCLSLYSSEHSHCLSCRQTVGIISNDFDSSEHGVPFQEESKSNNCDVNSLNSSLPLGRRLLKALLSFIEASVPSEALQSLWTEECRKTWGVKLHMSPHTDELLQLLTLFEGVFKRDFLSSKYAATEEILGSQVHDPTDAGSILVLPWIPQTSAAVALRLFELDASIIYVPCEKPKCGPDDESGGEYRKFPIRNNTLVKNERGENEPTELGFEEPLKEQSYVDLKNARNSYKRGGRGNRDQARSKKLQKRNNGSKSVSARKNHKGSEKLSQGFSSRPLGQGTTTQVQGPRSRRTIRRREEMRAPQETLFGRTSLAPTYQDIGESLKESLSAEWDDENISNAAVHMKNDDDINNVEAMDSDDDDDDVVHAVGYDQENWELSYNRASDGWNEDVIGASDENVDVSEDDNDMVEEEVVVGGEEDSEEEDGDMSEEEEESDGVIPTRPRNGEDDIESAGSEDYSDDD 1775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12010010 12018880 + Conep05aG0174200.1 Cone5ag1688 438706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1688 1775 MobiDBLite consensus disorder prediction 1710 1747 - -
Cone5ag1688 1775 MobiDBLite consensus disorder prediction 1748 1764 - -
Cone5ag1688 1775 Pfam HB1, ASXL, restriction endonuclease HTH domain 729 797 IPR007759 GO:0006355(InterPro)
Cone5ag1688 1775 MobiDBLite consensus disorder prediction 1 43 - -
Cone5ag1688 1775 CDD homeodomain 35 89 IPR001356 GO:0003677(InterPro)
Cone5ag1688 1775 Pfam Homeodomain 33 89 IPR001356 GO:0003677(InterPro)
Cone5ag1688 1775 MobiDBLite consensus disorder prediction 1018 1079 - -
Cone5ag1688 1775 Pfam DDT domain 548 603 IPR018501 -
Cone5ag1688 1775 Gene3D - 8 91 - -
Cone5ag1688 1775 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 939 983 IPR028942 -
Cone5ag1688 1775 ProSiteProfiles DDT domain profile. 547 606 IPR018501 -
Cone5ag1688 1775 MobiDBLite consensus disorder prediction 18 34 - -
Cone5ag1688 1775 MobiDBLite consensus disorder prediction 1511 1533 - -
Cone5ag1688 1775 SUPERFAMILY Homeodomain-like 22 89 IPR009057 -
Cone5ag1688 1775 SMART testlast3 547 606 IPR018501 -
Cone5ag1688 1775 Coils Coil 389 443 - -
Cone5ag1688 1775 Coils Coil 447 467 - -
Cone5ag1688 1775 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 8 1773 IPR044977 GO:0006357(InterPro)
Cone5ag1688 1775 MobiDBLite consensus disorder prediction 1710 1775 - -
Cone5ag1688 1775 MobiDBLite consensus disorder prediction 1511 1613 - -
Cone5ag1688 1775 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677(InterPro)
Cone5ag1688 1775 MobiDBLite consensus disorder prediction 388 413 - -
Cone5ag1688 1775 MobiDBLite consensus disorder prediction 84 113 - -
Cone5ag1688 1775 MobiDBLite consensus disorder prediction 301 322 - -
Cone5ag1688 1775 ProSiteProfiles HARE-type HTH domain profile. 729 798 IPR007759 GO:0006355(InterPro)
Cone5ag1688 1775 MobiDBLite consensus disorder prediction 855 880 - -
Cone5ag1688 1775 MobiDBLite consensus disorder prediction 1541 1559 - -
Cone5ag1688 1775 MobiDBLite consensus disorder prediction 1 17 - -
Cone5ag1688 1775 SMART HOX_1 32 94 IPR001356 GO:0003677(InterPro)
Cone5ag1688 1775 MobiDBLite consensus disorder prediction 1580 1602 - -
Cone5ag1688 1775 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1124 1197 IPR028941 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1254 Cone-Chr10:9597807 Cone5ag1688 Cone-Chr5:12010010 0 dispersed
Cone11ag0253 Cone-Chr11:1209901 Cone5ag1688 Cone-Chr5:12010010 5.44E-44 dispersed
Cone18ag1234 Cone-Chr18:8766756 Cone5ag1688 Cone-Chr5:12010010 2.39E-44 dispersed
Cone5ag1460 Cone-Chr5:9588173 Cone5ag1688 Cone-Chr5:12010010 2.70E-15 dispersed
Cone5ag1688 Cone-Chr5:12010010 Cone6ag1221 Cone-Chr6:9573943 1.10E-06 dispersed
Cone1ag0181 Cone-Chr1:1028847 Cone5ag1688 Cone-Chr5:12010010 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46233 PF01734 Patatin 5.00E-11 CL0323 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1688 - - - 0.0