Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1705 ATGGAGGAAGAGTCAAATTCTTGGCTAAGGAGAGCGAAATTTTCTCACACGGTTTGTCATAGATGGGACTCGGTTAGATTGAACTCTAGCCCTTTAATCCTCCAACCTGACCACAAAAATTTCGACTTGAAATCAAAATCAGGAGGAACATCTTCTTCCGGGCAGAAGTTGATGCCCGGAGGAAACTCCCATTTCCATCCAAGGCCTGCCCTGATAATGCAGCGGTCAGTCTCTCCCCTGCCCGAAACTCCAATCTCTGACACGTTCAAAGAAGCCCGGTCGAATCAAAGGCGGTTTTCTACTCCCTTGCCTCAACGTAGAGAACCCAAGAAGAAAGTGATTTCAAGAAAATCATCGAGTAATGATTTTCGGGAAGTTAAGTCATCAATGAATTCTATGCCCATGGGACATTTGACTTGTATGAGAGTCAATGAAAAGCCGAGGATCCATAAGGAATCTTCTTGGACTAAGTTGTTTGATCATGGTGGAGGTAGGGTTAGTGCCGTTGATGCCGTAGATGAATACGACGTGGATCTTTCCAAGTTGTTTCTTGGGGTTAGGTTTGCGCATGGTGCCCACAGCCGGCTTTACCATGGGATATATAAAGACGAACCCATTGCTGTTAAGTTGATTAGGGTCCCAGATGATGATGAAAATGGAGGTCTTGGGGCTCGGTTAGGAAAACAATTTAGTAGAGAAGTCACTCTTTTATCTCGACTTCACCATCCAAATGTTATAAAGTTGGTAGCAGCATGTAGAAAACCACCGGTTTATTGTGTCATAACAGAATACCTTTCCGAAGGTTCCTTAAGGGCATATCTACGCAAACTTGAGCACAAATCCCTTACTCTCCAAAAACTTATTGCGATCGCACTGGACATTGCTCGTGGGATGGAATACATTCAGTCTCAAGGTGTCATTCATAGGGACCTTAAACCTGAGAACATCCTCATCGATCAAGATATGCACTTCAAAGTCGCGGATTTTGGTATAGCTTGCGAGGAGGTGTATTGTGATTTGTTGGCTGATGATCCCGGGACTTACAGGTGGATGGCCCCTGAGATGATTAAACGTAAGTCATATGGGAAAAAGGTTGATGTTTATAGTTTTGGACTTATCTTGTGGGAAATGGTTGTTGGAACAATTCCATACGAGGACATGAACCCCATTCAGGCTGCTTTTGCAGTTGTGCATAAGAATCTTAGACCTGTTATTCCGGCAGACTGTCCATTGGCCATGCGAGCTTTGATCGATCAGTGTTGGTCCTTGCAACCCGAAAAGAGACCGGATTTTTGGCAAGTGGTTAAGGTACTCGAACAATTCGAATCTTCACTTGCTCGTGATGGGACGTTGAATTTTGTTCAAAACCAAATTTGCCAAGATCATAAGAAGGGCCTCCTCCATTGGATTCAGAAACTGGGTCCCGTTCCTTCATCTTCCCCTAATTTGACCACGCTTAAGCCTAAATTCTTATGA 1476 44.11 MEEESNSWLRRAKFSHTVCHRWDSVRLNSSPLILQPDHKNFDLKSKSGGTSSSGQKLMPGGNSHFHPRPALIMQRSVSPLPETPISDTFKEARSNQRRFSTPLPQRREPKKKVISRKSSSNDFREVKSSMNSMPMGHLTCMRVNEKPRIHKESSWTKLFDHGGGRVSAVDAVDEYDVDLSKLFLGVRFAHGAHSRLYHGIYKDEPIAVKLIRVPDDDENGGLGARLGKQFSREVTLLSRLHHPNVIKLVAACRKPPVYCVITEYLSEGSLRAYLRKLEHKSLTLQKLIAIALDIARGMEYIQSQGVIHRDLKPENILIDQDMHFKVADFGIACEEVYCDLLADDPGTYRWMAPEMIKRKSYGKKVDVYSFGLILWEMVVGTIPYEDMNPIQAAFAVVHKNLRPVIPADCPLAMRALIDQCWSLQPEKRPDFWQVVKVLEQFESSLARDGTLNFVQNQICQDHKKGLLHWIQKLGPVPSSSPNLTTLKPKFL 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12117338 12120941 + Conep05aG0175900.1 Cone5ag1705 438723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1705 491 PRINTS Tyrosine kinase catalytic domain signature 409 431 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1705 491 PRINTS Tyrosine kinase catalytic domain signature 300 318 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1705 491 PRINTS Tyrosine kinase catalytic domain signature 365 387 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1705 491 PRINTS Tyrosine kinase catalytic domain signature 346 356 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1705 491 PRINTS Tyrosine kinase catalytic domain signature 262 275 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1705 491 Pfam Protein tyrosine and serine/threonine kinase 189 438 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1705 491 FunFam serine/threonine-protein kinase HT1 267 460 - -
Cone5ag1705 491 MobiDBLite consensus disorder prediction 92 131 - -
Cone5ag1705 491 SMART serkin_6 182 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1705 491 Gene3D Phosphorylase Kinase; domain 1 171 266 - -
Cone5ag1705 491 CDD STKc_MAP3K-like 189 438 - -
Cone5ag1705 491 MobiDBLite consensus disorder prediction 38 61 - -
Cone5ag1705 491 ProSiteProfiles Protein kinase domain profile. 182 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1705 491 PANTHER SERINE-THREONINE PROTEIN KINASE 66 440 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone5ag1705 491 SUPERFAMILY Protein kinase-like (PK-like) 172 438 IPR011009 -
Cone5ag1705 491 MobiDBLite consensus disorder prediction 103 123 - -
Cone5ag1705 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1705 491 Gene3D Transferase(Phosphotransferase) domain 1 267 471 - -
Cone5ag1705 491 MobiDBLite consensus disorder prediction 45 59 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1705 Cone-Chr5:12117338 Cone5ag1835 Cone-Chr5:12907493 4.80E-108 dispersed
Cone1ag0167 Cone-Chr1:930630 Cone5ag1705 Cone-Chr5:12117338 0 wgd
Cone5ag1705 Cone-Chr5:12117338 Cone6ag1010 Cone-Chr6:5633418 1.71E-227 wgd
Cone5ag1705 Cone-Chr5:12117338 Cone8ag1535 Cone-Chr8:11531445 7.22E-42 wgd
Cone5ag1705 Cone-Chr5:12117338 Cone9ag1008 Cone-Chr9:5263645 8.06E-225 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82895 PF01852 START 1.10E-45 CL0209 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1705 - - - 0.0