Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag1736 | ATGAATGATTTGTTCTCAAGTTCGTTCCGCAAATATGCGGACCTCAAACAACAGGCGTACCTAGACGACATAGAAGCTAGGAAGGATAGCATCAACCTCGACAAATTCTTCGAAGATGTCGAGCTCGCAAGAGAAGACATCAAACAAGTTGAGAACCTCTACAAGAACCTACAAGAAGCCAATGCAGAAAGCAAAGTGGCCCACAATGCCAACACCATGAAAGAGGTGAGGTCTAGAATGGACTCAGATGTCGAAAAAGTCCTCAAACGGGTCAAACTCATCAAAGTCAAGCTTGAAGCTCTAGAAAAGTCCAATGCCGTTCACCGTAGCCTCCCAGGTTGTGGGCCAGGCTCATCTGCTGATCGGACTCGAACGTCAATTGTAAGCGGGCTCGGAAAAAAGCTCAAAGACATGATGGACAATTTCCAAGGCCTAAGGGCAAGAATAAATCAAGAGTACAAAGAAACCGTTGAGCGAAGGTATTATACAATCACGGGCCAAAGGGCAGATGAAGAGACGATAGAGAATTTGATATCGAGCGGAGAGAGTGAGAGCTTCTTTCAAAAGGCGATCCAAGAAGGAGGTAGAGGTCAAATTATGGACACCATTTCCGAGATGCAAGAAAGGCATGATGCCGTTAAGGAGATTGAGAAAAACTTGATCGAACTTCATCATATTTTCCTCGACATGGCGGCTTTGGTTTCAGCTCAAGGGCATCAATTAAACAATATAGAGAGCCATGTTGCTCATGCTAGCTCTTTTGTAAGGAGAGGGACTGATCAGCTTCAAGAGGCTAAAGTTCAACAGAGGAACTCTAGGAAGTGGACTTTTATTGCTATCATCCTTGCTATTGTTCTTATCATTGCTATTCTCTTCCCAATCTTTGTCCAATTTGCTCCAGTTGTTCGAAGAATGAGGGGGGAATATTGA | 930 | 44.09 | MNDLFSSSFRKYADLKQQAYLDDIEARKDSINLDKFFEDVELAREDIKQVENLYKNLQEANAESKVAHNANTMKEVRSRMDSDVEKVLKRVKLIKVKLEALEKSNAVHRSLPGCGPGSSADRTRTSIVSGLGKKLKDMMDNFQGLRARINQEYKETVERRYYTITGQRADEETIENLISSGESESFFQKAIQEGGRGQIMDTISEMQERHDAVKEIEKNLIELHHIFLDMAALVSAQGHQLNNIESHVAHASSFVRRGTDQLQEAKVQQRNSRKWTFIAIILAIVLIIAILFPIFVQFAPVVRRMRGEY | 309 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 12339572 | 12340501 | - | Conep05aG0179100.1 | Cone5ag1736 | 438754 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag1736 | 309 | CDD | SNARE_syntaxin1-like | 202 | 264 | - | - | |
| Cone5ag1736 | 309 | Pfam | Syntaxin | 35 | 238 | IPR006011 | GO:0016020(InterPro) | |
| Cone5ag1736 | 309 | Coils | Coil | 33 | 70 | - | - | |
| Cone5ag1736 | 309 | FunFam | Syntaxin 132 | 196 | 296 | - | - | |
| Cone5ag1736 | 309 | CDD | SynN | 33 | 190 | IPR006011 | GO:0016020(InterPro) | |
| Cone5ag1736 | 309 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 30 | 160 | - | - | |
| Cone5ag1736 | 309 | Gene3D | - | 197 | 297 | - | - | |
| Cone5ag1736 | 309 | SUPERFAMILY | t-snare proteins | 32 | 258 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
| Cone5ag1736 | 309 | ProSitePatterns | Syntaxin / epimorphin family signature. | 209 | 248 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
| Cone5ag1736 | 309 | PANTHER | SYNTAXIN | 35 | 284 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
| Cone5ag1736 | 309 | Coils | Coil | 84 | 104 | - | - | |
| Cone5ag1736 | 309 | Pfam | SNARE domain | 240 | 291 | IPR000727 | - | |
| Cone5ag1736 | 309 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - | |
| Cone5ag1736 | 309 | Gene3D | - | 33 | 160 | - | - | |
| Cone5ag1736 | 309 | SMART | SynN_4 | 28 | 154 | IPR006011 | GO:0016020(InterPro) | |
| Cone5ag1736 | 309 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone3ag0576 | Cone-Chr3:2843996 | Cone5ag1736 | Cone-Chr5:12339572 | 7.48E-65 | dispersed | |
| Cone1ag0131 | Cone-Chr1:738960 | Cone5ag1736 | Cone-Chr5:12339572 | 1.53E-196 | wgd | |
| Cone3ag1346 | Cone-Chr3:32432230 | Cone5ag1736 | Cone-Chr5:12339572 | 2.78E-71 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag1736 | K08486 | - | csv:101217140 | 460.299 |