Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1736 ATGAATGATTTGTTCTCAAGTTCGTTCCGCAAATATGCGGACCTCAAACAACAGGCGTACCTAGACGACATAGAAGCTAGGAAGGATAGCATCAACCTCGACAAATTCTTCGAAGATGTCGAGCTCGCAAGAGAAGACATCAAACAAGTTGAGAACCTCTACAAGAACCTACAAGAAGCCAATGCAGAAAGCAAAGTGGCCCACAATGCCAACACCATGAAAGAGGTGAGGTCTAGAATGGACTCAGATGTCGAAAAAGTCCTCAAACGGGTCAAACTCATCAAAGTCAAGCTTGAAGCTCTAGAAAAGTCCAATGCCGTTCACCGTAGCCTCCCAGGTTGTGGGCCAGGCTCATCTGCTGATCGGACTCGAACGTCAATTGTAAGCGGGCTCGGAAAAAAGCTCAAAGACATGATGGACAATTTCCAAGGCCTAAGGGCAAGAATAAATCAAGAGTACAAAGAAACCGTTGAGCGAAGGTATTATACAATCACGGGCCAAAGGGCAGATGAAGAGACGATAGAGAATTTGATATCGAGCGGAGAGAGTGAGAGCTTCTTTCAAAAGGCGATCCAAGAAGGAGGTAGAGGTCAAATTATGGACACCATTTCCGAGATGCAAGAAAGGCATGATGCCGTTAAGGAGATTGAGAAAAACTTGATCGAACTTCATCATATTTTCCTCGACATGGCGGCTTTGGTTTCAGCTCAAGGGCATCAATTAAACAATATAGAGAGCCATGTTGCTCATGCTAGCTCTTTTGTAAGGAGAGGGACTGATCAGCTTCAAGAGGCTAAAGTTCAACAGAGGAACTCTAGGAAGTGGACTTTTATTGCTATCATCCTTGCTATTGTTCTTATCATTGCTATTCTCTTCCCAATCTTTGTCCAATTTGCTCCAGTTGTTCGAAGAATGAGGGGGGAATATTGA 930 44.09 MNDLFSSSFRKYADLKQQAYLDDIEARKDSINLDKFFEDVELAREDIKQVENLYKNLQEANAESKVAHNANTMKEVRSRMDSDVEKVLKRVKLIKVKLEALEKSNAVHRSLPGCGPGSSADRTRTSIVSGLGKKLKDMMDNFQGLRARINQEYKETVERRYYTITGQRADEETIENLISSGESESFFQKAIQEGGRGQIMDTISEMQERHDAVKEIEKNLIELHHIFLDMAALVSAQGHQLNNIESHVAHASSFVRRGTDQLQEAKVQQRNSRKWTFIAIILAIVLIIAILFPIFVQFAPVVRRMRGEY 309
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 12339572 12340501 - Conep05aG0179100.1 Cone5ag1736 438754
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1736 309 CDD SNARE_syntaxin1-like 202 264 - -
Cone5ag1736 309 Pfam Syntaxin 35 238 IPR006011 GO:0016020(InterPro)
Cone5ag1736 309 Coils Coil 33 70 - -
Cone5ag1736 309 FunFam Syntaxin 132 196 296 - -
Cone5ag1736 309 CDD SynN 33 190 IPR006011 GO:0016020(InterPro)
Cone5ag1736 309 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Cone5ag1736 309 Gene3D - 197 297 - -
Cone5ag1736 309 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone5ag1736 309 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cone5ag1736 309 PANTHER SYNTAXIN 35 284 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone5ag1736 309 Coils Coil 84 104 - -
Cone5ag1736 309 Pfam SNARE domain 240 291 IPR000727 -
Cone5ag1736 309 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Cone5ag1736 309 Gene3D - 33 160 - -
Cone5ag1736 309 SMART SynN_4 28 154 IPR006011 GO:0016020(InterPro)
Cone5ag1736 309 SMART tSNARE_6 198 265 IPR000727 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0576 Cone-Chr3:2843996 Cone5ag1736 Cone-Chr5:12339572 7.48E-65 dispersed
Cone1ag0131 Cone-Chr1:738960 Cone5ag1736 Cone-Chr5:12339572 1.53E-196 wgd
Cone3ag1346 Cone-Chr3:32432230 Cone5ag1736 Cone-Chr5:12339572 2.78E-71 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1736 K08486 - csv:101217140 460.299