Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1779 ATGTTTCAACAAAAGAGTGTTCCTGATTCAAGCTTAAGACAGACCAACTCACTGGCTCATGATCATTATCTAGATTCTTCCAACAGTTCAATGGACCACGTGGATGAGGGTAACAACTCCAATCTTGCCTCGAAGCAGCGGCTAAGATGGACACATGAGCTTCATGAACGTTTTGTTGATGCAGTTGCACAGCTTGGTGGGCCAGATCGGGCTACACCCAAAGGTGTCCTTAGAGTAATGGGTGTTCAAGGGCTAACAATATATCATGTGAAAAGCCATTTACAGAAATATCGACTTGCAAAGTACCTTCCAGATGCCTCTTCTGATGGGAAAAAAGCTGACAAGAAAGAATCAGGGGATTCCCTTTCAAATGTGGATGGTTCATCGGGAATGCAAATCACTGAAGCTCTCAAACTGCAGATGGAGGTGCAAAAGCGTCTTCATGAACAACTGGAGGTGCAGAGACAGCTGCAATTACGTATAGAAGCACAGGGGAAGTACCTTAAGAAGATAATAGAAGAGCAACAGAGACTAAGTGGGGTCCTCTCAGAAGCTCCATCTTCTGGCATATCACCTCCCACTTCCGGCGAAAACTGCCCGGAATCTGACAAGACTGACCCAGCAACACCTGCCCCAACCTCTGAATCCCCTATTTTAGACAAGGTTGCCAAAGAACGGGCCCCACCCAAAAGCAGTGTTTCCATTGAGGATTCTTTCTCATCTCACCACGAACCATCGACCCCAGATTCTGGTTGCCACATCAGCTCCCCAAGTGAGAGCCCCAGAGAGAACCAGTCGATAAAGAAGCAACGGTTGACTTTGGATGGAGCATATGCTAAACCAGACATGGGCCTTACTCACCATATACTAGAGTCGTCAAGCTTAAACTCCTCTTATCAGCAGCAGCAGCCATATTCTTTTTCTGAGTAG 930 46.56 MFQQKSVPDSSLRQTNSLAHDHYLDSSNSSMDHVDEGNNSNLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDASSDGKKADKKESGDSLSNVDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPSSGISPPTSGENCPESDKTDPATPAPTSESPILDKVAKERAPPKSSVSIEDSFSSHHEPSTPDSGCHISSPSESPRENQSIKKQRLTLDGAYAKPDMGLTHHILESSSLNSSYQQQQPYSFSE 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12629516 12632418 - Conep05aG0183500.1 Cone5ag1779 438797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1779 309 Gene3D - 44 103 - -
Cone5ag1779 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 16 263 IPR046955 GO:0003700(InterPro)
Cone5ag1779 309 MobiDBLite consensus disorder prediction 182 212 - -
Cone5ag1779 309 Pfam MYB-CC type transfactor, LHEQLE motif 131 177 IPR025756 -
Cone5ag1779 309 MobiDBLite consensus disorder prediction 106 121 - -
Cone5ag1779 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677(InterPro)
Cone5ag1779 309 Coils Coil 134 154 - -
Cone5ag1779 309 MobiDBLite consensus disorder prediction 289 309 - -
Cone5ag1779 309 SUPERFAMILY Homeodomain-like 44 99 IPR009057 -
Cone5ag1779 309 MobiDBLite consensus disorder prediction 182 309 - -
Cone5ag1779 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Cone5ag1779 309 MobiDBLite consensus disorder prediction 233 263 - -
Cone5ag1779 309 MobiDBLite consensus disorder prediction 106 129 - -
Cone5ag1779 309 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
Cone5ag1779 309 FunFam Myb family transcription factor 44 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0088 Cone-Chr1:450511 Cone5ag1779 Cone-Chr5:12629516 6.49E-174 dispersed
Cone3ag0518 Cone-Chr3:2558394 Cone5ag1779 Cone-Chr5:12629516 7.11E-53 dispersed
Cone3ag0667 Cone-Chr3:3388592 Cone5ag1779 Cone-Chr5:12629516 4.61E-26 dispersed
Cone5ag0561 Cone-Chr5:2394518 Cone5ag1779 Cone-Chr5:12629516 4.08E-30 dispersed
Cone5ag1779 Cone-Chr5:12629516 Cone7ag0390 Cone-Chr7:1718930 5.15E-31 dispersed
Cone5ag1779 Cone-Chr5:12629516 Cone5ag1780 Cone-Chr5:12633936 6.71E-25 tandem
Cone1ag0087 Cone-Chr1:446668 Cone5ag1779 Cone-Chr5:12629516 1.85E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46244 PF04398 DUF538 1.50E-32 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1779 - - - 0.0