Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1793 ATGGCCTCAAAAACCAATTCTAACTCTTCTTCAATTGACCAAAATGGTCTTCTTCCAAAAACAACCAAACCTGATTCAATTACTCCAGAACAGTTATCTGAATCCCTAAAAACCGCCTTAAACTTGAAGCTGCCAAATTCTACCCCAAAGACTTCCACACAATCCTTGAAAAGTAAACTCAATTCCAATTTGGGTACCTCCTCACCTGGTCTTGAACAAACATCAACAGAAGTAGACTCTACTTATAATGATACTAGAGGCTCGCTTGAAAGCTCAATTGATCAAGAGAAGAAAATTTCTGAATATGGAAGTGTGAAGAACAGTTCTGTTTCTGCCAAAACAAGTGGGAGTGCAAAAATCAGTGACCGTATAGAAAGAGGAAGCACGGGCAGTGATGTCAGCGAAGAAAGCAGTTGTAGTAGCTTTAGTAGTAGTGTGAACAAGCCTCACAAAGCGAACGATATGAGATGGGAAGCGATCCAGGCTGTTAGATTGAAAGATGGACTACTGGGATTAGGCCATTTTCGGCTTTTGAAGAGGTTGGGCTGTGGTGATATTGGGAGTGTTTATCTTTCTGAGTTGAGTGGTACTAAATGTTTTTTCGCAATGAAGGTTATGGATAAAGGGTCATTAGCTAGTAGGAAGAAGTTGCTTAGAGCACAGACTGAACGGGAAATATTGCAATCTTTGGATCATCCTTTTCTTCCGACTTTATACTCCCATTTTGAGACAGATAAGTTCTCTTGCTTGGTTATGGAGTTCTGCCCTGGAGGCGATTTGCACACTCTAAGGCAAAGACAGCCTGGAAAACATTTTCAGGAGCAGGCAGTGAAATTTTATGTAGCAGAGGTTCTACTAGCTTTGGAATACCTTCATATGCTTGGGATCATCTACCGCGACCTAAAACCCGAAAACGTCCTTGTCCGAGAAGATGGACACATAATGCTCTCTGACTTTGACCTTTCACTTAGATGTGCTGTGAGTCCAACTCTAATCAAAAGCTCCTCCATGGAATCATCCGACCCTCAAAGAAAGAACCCAGTCTATTGCGTCCAACCGGCTTGTATCGAGCCCTCTTGCATCATCCAACCGTCTTGTGTGGCACCCACAACTTGCTTCTCTCCACGTCTCTTTTCCTCCAAGTCCAAGAAGGACCGTAAACCCAAAAACGAGATCAGAAACCAGGTCAGCCCTCTACCCGAGCTCATTGCGGAGCCCACAGAGGCTCGGTCCATGTCATTTGTAGGGACCCACGAGTACTTAGCACCCGAGATCATCAAGGGTGAAGGTCATGGTAGTGCTGTTGATTGGTGGACTTTTGGGATTTTTCTATACGAGCTATTGTTTGGAAAAACCCCTTTCAAAGGGTCCGGAAATCGGGCCACATTGTTCAATGTTGTGGGTCAGCCTCTCCGGTTTCCAGAATCTCCGGTCGTCAGCTTTGCTGCCCGGGATCTTATACGAGGATTGCTTGTCAAGGAGCCTCAACATAGATTGGCTTATAAAAGAGGTGCTACTGAGATTAAGCAACATCCCTTTTTTGAAGGGGTAAATTGGGCATTAATCCGATGTGCTACCCCACCTGATATTCCGAAACCCGTAGAGATCGAACGGATTCCGGGTGCCACGCCAGCATCGACGAGTGAAAAGGCTGCTGCTGTTCCTACTAATACGGCTGCTCCGGATCAGAAGAATCCAGATAATTATCTTGAGTTTGATTTTTTTTAG 1728 44.56 MASKTNSNSSSIDQNGLLPKTTKPDSITPEQLSESLKTALNLKLPNSTPKTSTQSLKSKLNSNLGTSSPGLEQTSTEVDSTYNDTRGSLESSIDQEKKISEYGSVKNSSVSAKTSGSAKISDRIERGSTGSDVSEESSCSSFSSSVNKPHKANDMRWEAIQAVRLKDGLLGLGHFRLLKRLGCGDIGSVYLSELSGTKCFFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYSHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFQEQAVKFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLIKSSSMESSDPQRKNPVYCVQPACIEPSCIIQPSCVAPTTCFSPRLFSSKSKKDRKPKNEIRNQVSPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPDIPKPVEIERIPGATPASTSEKAAAVPTNTAAPDQKNPDNYLEFDFF 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12725115 12728615 + Conep05aG0185100.1 Cone5ag1793 438811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1793 575 FunFam Serine/threonine-protein kinase AGC1-7 407 532 - -
Cone5ag1793 575 MobiDBLite consensus disorder prediction 102 124 - -
Cone5ag1793 575 MobiDBLite consensus disorder prediction 1 89 - -
Cone5ag1793 575 MobiDBLite consensus disorder prediction 1 149 - -
Cone5ag1793 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1793 575 FunFam serine/threonine-protein kinase D6PK-like 259 326 - -
Cone5ag1793 575 SUPERFAMILY Protein kinase-like (PK-like) 149 543 IPR011009 -
Cone5ag1793 575 ProSiteProfiles Protein kinase domain profile. 175 514 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1793 575 FunFam Serine/threonine-protein kinase D6PK-like 173 258 - -
Cone5ag1793 575 Gene3D Transferase(Phosphotransferase) domain 1 259 326 - -
Cone5ag1793 575 PANTHER FLIPPASE KINASE 1-RELATED 66 547 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone5ag1793 575 MobiDBLite consensus disorder prediction 131 149 - -
Cone5ag1793 575 SMART serkin_6 175 514 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1793 575 Pfam Protein kinase domain 411 514 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1793 575 Pfam Protein kinase domain 176 325 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1793 575 Gene3D Transferase(Phosphotransferase) domain 1 408 532 - -
Cone5ag1793 575 CDD STKc_phototropin_like 174 537 - -
Cone5ag1793 575 MobiDBLite consensus disorder prediction 549 564 - -
Cone5ag1793 575 MobiDBLite consensus disorder prediction 542 567 - -
Cone5ag1793 575 Gene3D Phosphorylase Kinase; domain 1 173 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0097 Cone-Chr11:411823 Cone5ag1793 Cone-Chr5:12725115 2.15E-229 dispersed
Cone11ag0540 Cone-Chr11:3027379 Cone5ag1793 Cone-Chr5:12725115 9.12E-222 dispersed
Cone12ag1543 Cone-Chr12:10981674 Cone5ag1793 Cone-Chr5:12725115 5.25E-187 dispersed
Cone14ag0490 Cone-Chr14:2403091 Cone5ag1793 Cone-Chr5:12725115 3.43E-213 dispersed
Cone14ag1258 Cone-Chr14:10108389 Cone5ag1793 Cone-Chr5:12725115 1.73E-253 dispersed
Cone15ag0519 Cone-Chr15:2535127 Cone5ag1793 Cone-Chr5:12725115 1.13E-213 dispersed
Cone15ag1280 Cone-Chr15:10048589 Cone5ag1793 Cone-Chr5:12725115 3.64E-249 dispersed
Cone16ag0780 Cone-Chr16:8698556 Cone5ag1793 Cone-Chr5:12725115 2.91E-133 dispersed
Cone16ag0885 Cone-Chr16:9214546 Cone5ag1793 Cone-Chr5:12725115 1.79E-185 dispersed
Cone18ag0964 Cone-Chr18:7023430 Cone5ag1793 Cone-Chr5:12725115 6.65E-221 dispersed
Cone18ag1379 Cone-Chr18:9457845 Cone5ag1793 Cone-Chr5:12725115 1.88E-225 dispersed
Cone1ag0527 Cone-Chr1:5199629 Cone5ag1793 Cone-Chr5:12725115 1.60E-132 dispersed
Cone2ag0168 Cone-Chr2:895285 Cone5ag1793 Cone-Chr5:12725115 1.31E-183 dispersed
Cone2ag0261 Cone-Chr2:1333294 Cone5ag1793 Cone-Chr5:12725115 5.68E-136 dispersed
Cone3ag0209 Cone-Chr3:1113014 Cone5ag1793 Cone-Chr5:12725115 4.62E-179 dispersed
Cone5ag1353 Cone-Chr5:8149607 Cone5ag1793 Cone-Chr5:12725115 7.89E-134 dispersed
Cone5ag1793 Cone-Chr5:12725115 Cone8ag1613 Cone-Chr8:11935714 8.15E-184 dispersed
Cone1ag0068 Cone-Chr1:340368 Cone5ag1793 Cone-Chr5:12725115 0 wgd
Cone3ag1262 Cone-Chr3:31437606 Cone5ag1793 Cone-Chr5:12725115 6.52E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82897 PF02463 SMC_N 1.40E-47 CL0023 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1793 K08286 - mdm:103422502 896.73