Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1798 ATGGAGCGTAGAGATGTTAGCTATAGCAAGATCCTCAACTCCAGCTCTGGGCTGAAGCTGTCTGAACTGGACATCAACAGCAGCAACAACAACAACCACACAACACCAGAAAACGAAAACAACGAGTGCACGGTAAGAGAACAAGACCGGTTCATGCCAATAGCAAACGTGATAAGGATCATGCGAAAGATACTCCCTCCCCATGCAAAAATCTCGGACGATGCGAAGGAAACGATCCAAGAATGCGTATCGGAATATATCAGCTTCATAACTGGCGAAGCCAACGAGCGGTGTCAGCGCGAGCAAAGGAAAACAATCACGGCCGAAGATGTTCTGTGGGCCATGAGCAAGCTCGGTTTCGACGACTACATTGAGCCGTTAACTGTTTATCTGCATCGGTACCGGGAAATGGAGGGTGATCGGGCGGGGTCCATGAGGGGTGGTACTGCAGATCATCATCATCACCAGTTGGTGAAACGGACGGTGGATCATGTTGGTGGTCCGTTCGGTATGGGTCATGTATATGGTGCTGCACCAAATGGGTTTTTAGCGCATCATCAAGGATTTCTCGGGTTTCTGAAGGATGCTTCTTCAAATGCCGGTGCCGGCGGTGGTAATTCTTCTCAGGCTGCCGTTGCAAATGGTGAACCGTATGCTTCTCAGTCGTTTAAGTGA 675 49.63 MERRDVSYSKILNSSSGLKLSELDINSSNNNNHTTPENENNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGDRAGSMRGGTADHHHHQLVKRTVDHVGGPFGMGHVYGAAPNGFLAHHQGFLGFLKDASSNAGAGGGNSSQAAVANGEPYASQSFK 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12749061 12750490 - Conep05aG0185600.1 Cone5ag1798 438816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1798 224 MobiDBLite consensus disorder prediction 201 224 - -
Cone5ag1798 224 Gene3D Histone, subunit A 38 161 IPR009072 GO:0046982(InterPro)
Cone5ag1798 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 28 184 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone5ag1798 224 FunFam Nuclear transcription factor Y subunit B-6 40 156 - -
Cone5ag1798 224 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag1798 224 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Cone5ag1798 224 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Cone5ag1798 224 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Cone5ag1798 224 SUPERFAMILY Histone-fold 48 146 IPR009072 GO:0046982(InterPro)
Cone5ag1798 224 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1243 Cone-Chr15:9811904 Cone5ag1798 Cone-Chr5:12749061 3.49E-60 dispersed
Cone5ag1798 Cone-Chr5:12749061 Cone8ag1366 Cone-Chr8:10907603 4.11E-46 dispersed
Cone1ag0062 Cone-Chr1:313120 Cone5ag1798 Cone-Chr5:12749061 9.65E-144 wgd
Cone15ag1238 Cone-Chr15:9791392 Cone5ag1798 Cone-Chr5:12749061 1.08E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46246 PF07859 Abhydrolase_3 1.30E-60 CL0028 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1798 K08065 - vvi:100855401 235.343