Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1816 ATGCAAGCTTCTAAGAACCACGAGATCTCAGCCAGTATTCGTGGGTTATACGATCACCAGCTAATGCAAGAGATCGACACCTACTATCTATCTCATTTCCAAATATCACCAAATAACATGTGCCCTGAAAATAGCAGCCATGGTGCCTCCAACCTTTCTTTTCGCCACCACTCCTACAAGGAAAACTTCTTCACACTAGACTCAACCCCTCCAATAGCTTCCCATTTTGTTGTCTGTGAATCTTCTTCTAATGGCAGTGTTTTGTCCGATATGAGCCCGATTTCACCTCAAGAAGGCTCTCAGACCTGTTCCTCGGACCCCCAACCTTTCTCTGATCCCACTTACGGGTCCCCCATAAGCGGGTGTTCTGTTGCAGATGAAGGCAATGAATTGAAGAACAAACTCCGTGAGATTGAAATTTCCTTACTCGGGCCTGAAATGAATGTTAATGACGGGTGTTATTGTTCGTACCGGAATTGCACCCATCAAGCCACTTCTAATGCGAATTGGGATTGGAATCAGATCCAAGAAGTGATCCCCAGTTGGACTTTAAAAGAAGTGCTTATCAAATGCGCAAATGCTGTTTATGAGGTGGATTTTTCAACCGCCACATTTTTCATCCAGGTTTTGGAACGGATGGTGTCTGTTTCTGGGGACCCGGCCCAACGGTTGGGAGCTTACTTGTTAGAAGGGCTTAGAGCAAGGTTGGAAAGATCTGGAAGCTCCATCTACAAAGCCCTAAAGTGCGAAGAACCTACCGGCCCAGAGCTAATGTCTTACATGTCCATCCTTTACGTGGCATGCCCCTATTGGCAATTCACTTACACTTCAGCAAACGTAGTTATTAAAGAGGCTATGGAAAATGAATCTCAAATCCACATCATCGATTTCCAAATCGCTCAGGGCAGTCAGTGGGCTCTACTCATCCCGGAACTAGCCAATCGGTGTGGTGGGCCTCCAGCTATTAGAATCACCGGTGTTGATGACTCCCAATCTGCCCGTGCTCGAGGTGGAGGGCTCGAGATGGTAGGCCGGAGGTTATCAGATATCGCCAAGTCACATGGGGTCCACTTCGAGTTCCATGCAGCCCCCATGTTCGGGTTTCGAGTCGAACAACATCACCTTGGGCTTCGACCCGGAGAAGCCGTAGCTGTTAATTTCCCGTACGTGTTGCATCACATGCCAGACGAGAGTGTGAGCACGGACAATCATAGAGACCGGTTATTACAGCTCGTGAAAAGCCTCTCCCCTAAAGTGGTAACCCTAGGGGAGCAAGAATCCAACACAAACACTTCCCCATTTATGTTGCGATTTCACGAGATGTTGGAATACTACACGGCCATGTTTGAGTCGATAGATGCAGGGTCCACGAAAGATGAGCGGCAGAGGATCAAGGCGGAGCAGAATTGCGTGGCTCGGGATATAGTGAACATGATAGCTTGTGAAGGGTCTGAAAGGGTCGAGAGGCATGAGCCTTTTGTTAAGTGGAGGTTCAGGTTAATGAGTGCTGGGTTTAGTCCGTGCCCGTTGAGTTGTAAGGCGAGGGAGGCTGTTTGGAAATTGATGTCCACGTTTAGTAATAAGTACTGGGTTCAGGAGAGAGAAGGGGCTTTTTATCTTGGCTGGATGAATAGAGCTATGGCTACTTCTTCTGCTTGGAGATAG 1665 47.87 MQASKNHEISASIRGLYDHQLMQEIDTYYLSHFQISPNNMCPENSSHGASNLSFRHHSYKENFFTLDSTPPIASHFVVCESSSNGSVLSDMSPISPQEGSQTCSSDPQPFSDPTYGSPISGCSVADEGNELKNKLREIEISLLGPEMNVNDGCYCSYRNCTHQATSNANWDWNQIQEVIPSWTLKEVLIKCANAVYEVDFSTATFFIQVLERMVSVSGDPAQRLGAYLLEGLRARLERSGSSIYKALKCEEPTGPELMSYMSILYVACPYWQFTYTSANVVIKEAMENESQIHIIDFQIAQGSQWALLIPELANRCGGPPAIRITGVDDSQSARARGGGLEMVGRRLSDIAKSHGVHFEFHAAPMFGFRVEQHHLGLRPGEAVAVNFPYVLHHMPDESVSTDNHRDRLLQLVKSLSPKVVTLGEQESNTNTSPFMLRFHEMLEYYTAMFESIDAGSTKDERQRIKAEQNCVARDIVNMIACEGSERVERHEPFVKWRFRLMSAGFSPCPLSCKAREAVWKLMSTFSNKYWVQEREGAFYLGWMNRAMATSSAWR 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12832470 12835448 + Conep05aG0187400.1 Cone5ag1816 438834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1816 554 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 168 553 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone5ag1816 554 Pfam GRAS domain family 184 554 IPR005202 -
Cone5ag1816 554 ProSiteProfiles GRAS family profile. 175 554 IPR005202 -
Cone5ag1816 554 MobiDBLite consensus disorder prediction 88 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1816 Cone-Chr5:12832470 Cone6ag0094 Cone-Chr6:455288 4.71E-130 dispersed
Cone1ag0045 Cone-Chr1:251397 Cone5ag1816 Cone-Chr5:12832470 0 wgd
Cone15ag1224 Cone-Chr15:9727275 Cone5ag1816 Cone-Chr5:12832470 8.35E-61 wgd
Cone3ag1294 Cone-Chr3:31806914 Cone5ag1816 Cone-Chr5:12832470 1.07E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46248 PF04690 YABBY 5.90E-69 CL0114 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1816 K27748 - csv:101207883 659.062