Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1835 ATGGCTACCTCATATCTCCACGCACTCTGCCTTAGAAAATCAAAGAGCAAGCCCTTCCAAATCCCTTCTTCATCAAAAACCCAGTTGAATTCGTACATGGAGAACATGGAAAGAAAGAGATTCGACAGCGTGGAATCATGGTCGATGATATTAGACTCAGAAAACGTCGAAACATGGGAGGTTTCAAAAGAAGATCAGGAAGAATGGACGGCGGATCTTTCCCAACTCTTTATCGGAAACAAATTTGCTTCCGGAGCTCATAGTAGAATATACCGTGGGATCTACAAGCAACGAGCTGTTGCCGTGAAAATGGTGAGGATTCCAAACCAAAAAGATGAGACGAGAACTCTACTCGAATCTCAGTTTAAATCCGAAGTGGCTCTGCTTTCGCGTTTGTTTCATCCAAACATTGTTCAGTTCATTGCGGCTTGTAAGAAACCCCCTGTTTATTGCATAATCACGGAGTACATGTCACAAGGAACTCTAAGGATGTACTTGAACAAAAAGGAGCCCTACTCTCTTTCTACCGAAACAATCCTCCGTTTAGCACTAGACATTTCTAGAGGAATGGAGTATTTGCATTCACAAGGAGTGATCCATAGAGATCTCAAGTCGAACAATCTTCTTCTGAATGATGAGATGAGGGTTAAGGTTGCCGATTTTGGCACGTCATGTCTTGAAACGCAGTGCCGGGAATCTAAAGGGAATAAGGGAACTTATCGTTGGATGGCCCCAGAAATGATCAGGGAGAAACCTTATACTCGTAAAGTCGATGTTTATAGCTTCGGAATAGTCCTATGGGAGCTCACTACAGCTTTGCTTCCCTTTCAAGGCATGACCCCTGTTCAGGCTGCATTTGCAGTTGCAGAAAAGAAAGAAAGGCCACCATTGCCTGCAAGTTGTCAACCTGCTCTGGCCCACCTTATAAAACGGTGTTGGGCGGCAAATCCCTCAAAGCGGCCGGATTTTAGCGACATCATAGCGGCTTTGGAGAAGTACGATGAATGTGTGAAGGAGGGGCTTCCGCTTCCGCACAACTCAGGCCTCGTGAATAAAAATGTCATTCTCGAACGTTTGAAAGGCTGTATATCTATGACTTCTTCTATAACCGTACATGCTTGA 1122 44.47 MATSYLHALCLRKSKSKPFQIPSSSKTQLNSYMENMERKRFDSVESWSMILDSENVETWEVSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKDETRTLLESQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNKGTYRWMAPEMIREKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKKERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIIAALEKYDECVKEGLPLPHNSGLVNKNVILERLKGCISMTSSITVHA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12907493 12910015 - Conep05aG0189400.1 Cone5ag1835 438853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1835 373 SUPERFAMILY Protein kinase-like (PK-like) 52 330 IPR011009 -
Cone5ag1835 373 Pfam Protein tyrosine and serine/threonine kinase 79 330 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1835 373 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1835 373 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1835 373 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1835 373 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1835 373 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag1835 373 FunFam Serine/threonine-protein kinase isoform 1 66 158 - -
Cone5ag1835 373 FunFam serine/threonine-protein kinase HT1 159 351 - -
Cone5ag1835 373 CDD STKc_MAP3K-like 83 330 - -
Cone5ag1835 373 Gene3D Transferase(Phosphotransferase) domain 1 159 345 - -
Cone5ag1835 373 SMART serkin_6 76 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1835 373 PANTHER SERINE-THREONINE PROTEIN KINASE 70 331 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone5ag1835 373 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Cone5ag1835 373 ProSiteProfiles Protein kinase domain profile. 76 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1835 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0263 Cone-Chr16:2923665 Cone5ag1835 Cone-Chr5:12907493 3.11E-94 dispersed
Cone1ag0167 Cone-Chr1:930630 Cone5ag1835 Cone-Chr5:12907493 8.50E-109 dispersed
Cone2ag0700 Cone-Chr2:32593335 Cone5ag1835 Cone-Chr5:12907493 3.11E-94 dispersed
Cone2ag0904 Cone-Chr2:34854307 Cone5ag1835 Cone-Chr5:12907493 1.61E-115 dispersed
Cone5ag1705 Cone-Chr5:12117338 Cone5ag1835 Cone-Chr5:12907493 4.80E-108 dispersed
Cone5ag1835 Cone-Chr5:12907493 Cone6ag1010 Cone-Chr6:5633418 1.11E-104 dispersed
Cone1ag0032 Cone-Chr1:202811 Cone5ag1835 Cone-Chr5:12907493 1.16E-264 wgd
Cone20ag0783 Cone-Chr20:5515833 Cone5ag1835 Cone-Chr5:12907493 9.63E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82898 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1835 - - - 0.0