Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1838 ATGGGGATCGATAACTTGGGGTCGATGTCTATTGCGAAAGGGGATGAGGTTGAGAAGGGGGACGGAGAGGAGGTGTACGTTCCGCCTCTGAACTTCGCGATGGTCGATAATGGCGTTTTTAGGTCTGGTTTTCCCGATTCTGCCAACTTCGGCTTCCTCAAATCTCTTGGCCTTCGTTCTGTGATATATTTGTGCCCCGAACCGTATCCAGAAGCTAATTCAGAGTTTGTCAAAGCTAATGGAATCAAGCTTTTCCAGTTTGGGATTGACGGTCGTAAGGAGCCTTTTGTAAACATTCCAGAGGACACCGTCCGTGATGCTCTGAGAGTACTTCTCGATGTGCGGAACCACCCTGTCCTAATTCACTGTAAACGGGGAAAGCATCGGACCGGTTGCATTGTGGGATGCTTGAGAAGGTTACAAAAATGGTGTCTTTCTTCTGTCTTCGACGAGTATCAGAGATTTGCAGCCGCCAAAGCCAGATTGTCTGACCAGAGGTTCATAGAATTGTTCGATATATCAAACTTGAAGCACTTGTCTACTTCGTTTTCATGTTCTCGGACCAGAGGCTCATAG 576 47.4 MGIDNLGSMSIAKGDEVEKGDGEEVYVPPLNFAMVDNGVFRSGFPDSANFGFLKSLGLRSVIYLCPEPYPEANSEFVKANGIKLFQFGIDGRKEPFVNIPEDTVRDALRVLLDVRNHPVLIHCKRGKHRTGCIVGCLRRLQKWCLSSVFDEYQRFAAAKARLSDQRFIELFDISNLKHLSTSFSCSRTRGS 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12920068 12921864 + Conep05aG0189700.1 Cone5ag1838 438856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1838 191 PANTHER TYROSINE-PROTEIN PHOSPHATASE 21 181 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cone5ag1838 191 FunFam probable tyrosine-protein phosphatase At1g05000 25 175 - -
Cone5ag1838 191 PRINTS Plant and fungal dual specificity phosphatase signature 26 43 IPR020428 GO:0016791(InterPro)
Cone5ag1838 191 PRINTS Plant and fungal dual specificity phosphatase signature 82 96 IPR020428 GO:0016791(InterPro)
Cone5ag1838 191 PRINTS Plant and fungal dual specificity phosphatase signature 99 113 IPR020428 GO:0016791(InterPro)
Cone5ag1838 191 PRINTS Plant and fungal dual specificity phosphatase signature 63 76 IPR020428 GO:0016791(InterPro)
Cone5ag1838 191 CDD PFA-DSP_Siw14 27 172 - -
Cone5ag1838 191 ProSiteProfiles Dual specificity protein phosphatase domain profile. 31 185 IPR020422 GO:0006470(InterPro)
Cone5ag1838 191 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 26 173 IPR029021 -
Cone5ag1838 191 ProSitePatterns Tyrosine specific protein phosphatases active site. 121 131 IPR016130 GO:0016311(InterPro)
Cone5ag1838 191 Gene3D Protein tyrosine phosphatase superfamily 26 175 IPR029021 -
Cone5ag1838 191 Pfam Tyrosine phosphatase family 26 179 IPR004861 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1396 Cone-Chr10:10862174 Cone5ag1838 Cone-Chr5:12920068 1.17E-95 dispersed
Cone1ag1691 Cone-Chr1:57943849 Cone5ag1838 Cone-Chr5:12920068 4.91E-58 dispersed
Cone5ag0937 Cone-Chr5:4009079 Cone5ag1838 Cone-Chr5:12920068 4.10E-78 dispersed
Cone5ag1838 Cone-Chr5:12920068 Cone8ag1552 Cone-Chr8:11633645 2.83E-98 dispersed
Cone5ag1838 Cone-Chr5:12920068 Cone12ag1505 Cone-Chr12:10695053 2.07E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1838 K18045 - vvi:100251662 305.834