Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag1845 | ATGATCAATATGGGCATAGGAGAGATGATGATGATGCAGCTGCCGCTCCTCTCCTCCACCCATCATCATCATCAACATGATGCTAGCTCTAACAGTAGTAGTGGCCCCATATTTCTCAATCCTCTACCTCAAACTGCAACACCTAACAATCAGGATCAAAGATGCCACATGAACATGAATCCCTCACCTGGCTGTTATTTCATGGAAGTCGACAACAACGATGGTGAAATCAACACTAATACTGCTGCTTCTGTTACTTCATCTTCTACTGTTGTCAAGGCTAAGATCATGGCTCATCCTCACTACCGTCGCCTCTTGGCTGCCTACGTTAATTGTCAAAGAGTGGGTGCGCCTCCGGAAGTGGTAGCAAGGCTGGAAGAAGCATGTGCAGCAGCGGCTACGATGAGCCAGGCTGCGGGTACGAGTTGCATCGGCGAAGATCCGGCGCTTGACCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTATGAGCAAGAACTCTCTAAGCCTTTCAAGGAAGCCATGCTTTTTCTTCAGAGGATCGACTGCCAATTCAAAGCCCTCACTCTTCCCTCCGATTCTGTGTATTTAGTGGTATGTGTAGAGGCTATGGATCGGAATGGATCATCTGAAGAAGAGGCCGACGTGAACAACCATTCGATTGATCCGCAAGCAGAAGAAAGAGAGCTGAAAGGTCAGCTTCTGCGCAAGTACAGTGGATATTTGGGAAGTCTGAAGCAGGAATTTATGAAGAAGAGGAAGAAAGGGAAGCTGCCCAAGGATGCCAGGCAACAATTGCTTGATTGGTGGAGCCGCCATTACAAATGGCCTTATCCCTCGGAATCACAGAAGCTGGCGCTGGCAGAATCAACCGGTTTGGATCAGAAGCAGATAAACAACTGGTTTATCAACCAAAGGAAAAGACACTGGAAGCCGTCGGAAGATATGCAGTTTGTGGTGATGGATGCTACTCATCCCGGCCAGTGTTACATGGACAGTGTGCTTGGAAATCCGTTTCCCTTGGATATCTCTCACACCCTCCTCTAA | 1050 | 48.1 | MINMGIGEMMMMQLPLLSSTHHHHQHDASSNSSSGPIFLNPLPQTATPNNQDQRCHMNMNPSPGCYFMEVDNNDGEINTNTAASVTSSSTVVKAKIMAHPHYRRLLAAYVNCQRVGAPPEVVARLEEACAAAATMSQAAGTSCIGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIDCQFKALTLPSDSVYLVVCVEAMDRNGSSEEEADVNNHSIDPQAEERELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKDARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPGQCYMDSVLGNPFPLDISHTLL | 349 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 12953241 | 12955908 | + | Conep05aG0190400.1 | Cone5ag1845 | 438863 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag1845 | 349 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 88 | 320 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cone5ag1845 | 349 | CDD | homeodomain | 262 | 314 | IPR001356 | GO:0003677(InterPro) | |
Cone5ag1845 | 349 | Pfam | KNOX1 domain | 92 | 130 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cone5ag1845 | 349 | Pfam | Homeobox KN domain | 270 | 309 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cone5ag1845 | 349 | Gene3D | - | 255 | 317 | - | - | |
Cone5ag1845 | 349 | SUPERFAMILY | Homeodomain-like | 252 | 325 | IPR009057 | - | |
Cone5ag1845 | 349 | MobiDBLite | consensus disorder prediction | 19 | 53 | - | - | |
Cone5ag1845 | 349 | ProSiteProfiles | 'Homeobox' domain profile. | 250 | 313 | IPR001356 | GO:0003677(InterPro) | |
Cone5ag1845 | 349 | SMART | KNOX2_2 | 140 | 191 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cone5ag1845 | 349 | FunFam | Homeobox protein knotted-1-like 2 | 255 | 317 | - | - | |
Cone5ag1845 | 349 | SMART | HOX_1 | 252 | 317 | IPR001356 | GO:0003677(InterPro) | |
Cone5ag1845 | 349 | SMART | KNOX1_2 | 90 | 134 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cone5ag1845 | 349 | Pfam | ELK domain | 230 | 251 | IPR005539 | GO:0003677(InterPro) | |
Cone5ag1845 | 349 | ProSitePatterns | 'Homeobox' domain signature. | 288 | 311 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cone5ag1845 | 349 | Pfam | KNOX2 domain | 143 | 190 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cone5ag1845 | 349 | SMART | ELK_2 | 230 | 251 | IPR005539 | GO:0003677(InterPro) | |
Cone5ag1845 | 349 | ProSiteProfiles | ELK domain profile. | 230 | 250 | IPR005539 | GO:0003677(InterPro) | |
Cone5ag1845 | 349 | MobiDBLite | consensus disorder prediction | 29 | 53 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone4ag1642 | Cone-Chr4:12394528 | Cone5ag1845 | Cone-Chr5:12953241 | 2.30E-92 | dispersed | |
Cone5ag1845 | Cone-Chr5:12953241 | Cone7ag1308 | Cone-Chr7:9610040 | 9.16E-94 | dispersed | |
Cone1ag0023 | Cone-Chr1:160943 | Cone5ag1845 | Cone-Chr5:12953241 | 1.94E-65 | transposed | |
Cone1ag0022 | Cone-Chr1:159153 | Cone5ag1845 | Cone-Chr5:12953241 | 9.76E-102 | wgd | |
Cone3ag1319 | Cone-Chr3:32124771 | Cone5ag1845 | Cone-Chr5:12953241 | 5.36E-93 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46251 | PF06068 | TIP49 | 1.60E-168 | CL0023 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag1845 | - | - | - | 0.0 |