Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1845 ATGATCAATATGGGCATAGGAGAGATGATGATGATGCAGCTGCCGCTCCTCTCCTCCACCCATCATCATCATCAACATGATGCTAGCTCTAACAGTAGTAGTGGCCCCATATTTCTCAATCCTCTACCTCAAACTGCAACACCTAACAATCAGGATCAAAGATGCCACATGAACATGAATCCCTCACCTGGCTGTTATTTCATGGAAGTCGACAACAACGATGGTGAAATCAACACTAATACTGCTGCTTCTGTTACTTCATCTTCTACTGTTGTCAAGGCTAAGATCATGGCTCATCCTCACTACCGTCGCCTCTTGGCTGCCTACGTTAATTGTCAAAGAGTGGGTGCGCCTCCGGAAGTGGTAGCAAGGCTGGAAGAAGCATGTGCAGCAGCGGCTACGATGAGCCAGGCTGCGGGTACGAGTTGCATCGGCGAAGATCCGGCGCTTGACCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTATGAGCAAGAACTCTCTAAGCCTTTCAAGGAAGCCATGCTTTTTCTTCAGAGGATCGACTGCCAATTCAAAGCCCTCACTCTTCCCTCCGATTCTGTGTATTTAGTGGTATGTGTAGAGGCTATGGATCGGAATGGATCATCTGAAGAAGAGGCCGACGTGAACAACCATTCGATTGATCCGCAAGCAGAAGAAAGAGAGCTGAAAGGTCAGCTTCTGCGCAAGTACAGTGGATATTTGGGAAGTCTGAAGCAGGAATTTATGAAGAAGAGGAAGAAAGGGAAGCTGCCCAAGGATGCCAGGCAACAATTGCTTGATTGGTGGAGCCGCCATTACAAATGGCCTTATCCCTCGGAATCACAGAAGCTGGCGCTGGCAGAATCAACCGGTTTGGATCAGAAGCAGATAAACAACTGGTTTATCAACCAAAGGAAAAGACACTGGAAGCCGTCGGAAGATATGCAGTTTGTGGTGATGGATGCTACTCATCCCGGCCAGTGTTACATGGACAGTGTGCTTGGAAATCCGTTTCCCTTGGATATCTCTCACACCCTCCTCTAA 1050 48.1 MINMGIGEMMMMQLPLLSSTHHHHQHDASSNSSSGPIFLNPLPQTATPNNQDQRCHMNMNPSPGCYFMEVDNNDGEINTNTAASVTSSSTVVKAKIMAHPHYRRLLAAYVNCQRVGAPPEVVARLEEACAAAATMSQAAGTSCIGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIDCQFKALTLPSDSVYLVVCVEAMDRNGSSEEEADVNNHSIDPQAEERELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKDARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPGQCYMDSVLGNPFPLDISHTLL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12953241 12955908 + Conep05aG0190400.1 Cone5ag1845 438863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1845 349 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 320 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone5ag1845 349 CDD homeodomain 262 314 IPR001356 GO:0003677(InterPro)
Cone5ag1845 349 Pfam KNOX1 domain 92 130 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone5ag1845 349 Pfam Homeobox KN domain 270 309 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone5ag1845 349 Gene3D - 255 317 - -
Cone5ag1845 349 SUPERFAMILY Homeodomain-like 252 325 IPR009057 -
Cone5ag1845 349 MobiDBLite consensus disorder prediction 19 53 - -
Cone5ag1845 349 ProSiteProfiles 'Homeobox' domain profile. 250 313 IPR001356 GO:0003677(InterPro)
Cone5ag1845 349 SMART KNOX2_2 140 191 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone5ag1845 349 FunFam Homeobox protein knotted-1-like 2 255 317 - -
Cone5ag1845 349 SMART HOX_1 252 317 IPR001356 GO:0003677(InterPro)
Cone5ag1845 349 SMART KNOX1_2 90 134 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone5ag1845 349 Pfam ELK domain 230 251 IPR005539 GO:0003677(InterPro)
Cone5ag1845 349 ProSitePatterns 'Homeobox' domain signature. 288 311 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone5ag1845 349 Pfam KNOX2 domain 143 190 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone5ag1845 349 SMART ELK_2 230 251 IPR005539 GO:0003677(InterPro)
Cone5ag1845 349 ProSiteProfiles ELK domain profile. 230 250 IPR005539 GO:0003677(InterPro)
Cone5ag1845 349 MobiDBLite consensus disorder prediction 29 53 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1642 Cone-Chr4:12394528 Cone5ag1845 Cone-Chr5:12953241 2.30E-92 dispersed
Cone5ag1845 Cone-Chr5:12953241 Cone7ag1308 Cone-Chr7:9610040 9.16E-94 dispersed
Cone1ag0023 Cone-Chr1:160943 Cone5ag1845 Cone-Chr5:12953241 1.94E-65 transposed
Cone1ag0022 Cone-Chr1:159153 Cone5ag1845 Cone-Chr5:12953241 9.76E-102 wgd
Cone3ag1319 Cone-Chr3:32124771 Cone5ag1845 Cone-Chr5:12953241 5.36E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46251 PF06068 TIP49 1.60E-168 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1845 - - - 0.0