Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag1846 | ATGGCTGTCAAACAAGTGCTTCTTCCTTCTCTCCAGTTTACTCGCTGTCTCATTCAGTTCCTGCTTCTCTCCTGGATTTCTGCTTCTCTTCCTTCTGCTCGTGCTATCACTGATGCCTCTGACGTTCAAGCTCTGCAGGTCATGTACACGGCATTAAACAGTCCTCCTCAGCTAACTGGTTGGAAAAGCAGTGGAGGCGATCCTTGTGGACAGTCGTGGGTCGGGGTCACCTGTGCCGGATCCGCTGTTGTTTTCGTTGAGATTCGTGGGTTAGGTCTTAATGGAACATTGGGATACTTACTCTCCGACCTTGTCTCATTGAAAATACTTGATTTGAGTGACAACATGCTTCATGATACTCTCCCATACCAGCTACCACCAAATCTTTCAAGCCTAAATCTTGCCAGCAACAATTTTACCGGGAATCTTCCCTATTCCATTGCCAATATGGTTTCATTAAGTTATTTGAACATTAGTCGAAATTCAGTCTCCCAGTCAATTGGAGACATTTTCAGTAATCTTCCTGCCCTCATAACCGTGGATCTTTCTTTCAACAACTTCTCAGGGGAGCTTCCGGTTTCCTTTGGCTTATTGTCCAATCTTTCTTCCCTCTATCTAGCAAACAATCTGTTGACTGGCACACTCAGTAACCTTAGAAATTTGACTTTAAATACTCTAAATGTTGAAAACAATAACTTCAGTGGATGGATACCACCCGAGCTAATTTCAATTCCGAATTTCATATACGGTGGAAATTCATTTGATAATGGCCCTGCACCTCCTCCGCCACCGTTTAGTGTTCCTCCTCCCGCAAAAGCTCAAAATAAATCAAACCACTCTGGATCTGGAACCAATATCACCGACTCTAGTGATGAATCATCTCAATCAAACAAAGGCTTGCAAATAGGGGCTATTATAGGCATAATTCTGGGTGTTGTCATTCTTACTCTCATTGCATTAGCAATTCTTGTCTTCTGTGTTCGAAAGAATAAAAAGAACAATGGCCGAAGAAGAGCTTCCAGTGGAAATCTCGCTATTGGCACAACTAGTGTAAATGCTGATATTCAAGACCAAAGGGTGAAAAGTGTGGCGGCTGTTGCGGATCTGAAACCCCTTCCTTCTGAAAAGATCACAGCTGAGAGGGTTCATTGGAAAAATGGATCTGTTAATAGGGTAAAGTCACCTATAACTGCTACCTCTCACACTGTTGCTTCTCTCCAGACAGCCACTAATAGCTTCAGCCAAGACTATCTAATTGGCGAAGGCTCACTTGGACGTGTTTACAGAGCAGAGTTCTCCAATGGGAAGATAATGGCTATCAAAAAGATCGACAATGCAGCACTGTCACTACAGGAGGAAGACAATTTTCTTGAAGCCGTCTCAAATATGTCAAGATTGAGGCACCCAAACATTGTTACACTTGGTGGATATTGTGCAGAACATGGTCAACGTCTTCTAGTCTATGAGTATATCGGAAATGGAAGTCTGCACGACATGCTCCATTTCGCTGATGATAGCAGCAAGGCTTTGCCTTGGAATGCACGTGTTAGGGTAGCTCTTGGCACTGCTCGAGCCCTAGAATATTTGCACGAGGTGTGCTTGCCTTCTGTTGTGCATAGAAATTTCAAGTCAGCAAACATTCTACTTGATGAAGAGCTCAATCCTCACCTATCAGACTGTGGTCTAGCTGCTCTAACACCCAACACAGAGCGACATGTTTCAGCTCAGATGATTGGTTCATTTGGTTATAGTGCTCCTGAATTTGCCTTATCAGGAATATACACTGTCAAAAGTGATGTGTACAGCTTTGGGGTGGTCATGTTGGAACTCTTAACTGGTCGGAAACCTCTTGACAGTTCAAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCGACTCCTCAACTCCATGACATAGATGCATTAGCAAAAATGGTTGATCCTTCTTTGAATGGCATGTACCCGGCCAAGTCTCTGTCACGTTTTGCAGATGTCATTGCCCTCTGCGTCCAGGTAAATTTGATTTGCTATTTTGATGCATTGTCTTTGTCATCTTTCCATCCTCTGGTTCCATTGCTTTTTGTACAGCCGGAACCTGAATTTAGGCCTCCCATGTCTGAAGTGGTGCAAGCACTAGTACGGTTAGTGCAGAGGGCTAGTGTGGTGAAAAGGCATACCAGCGATGAATCCAGTTTCTTGTACAGGACCCCGGATCACAAAGCACTTGAGATGTCATTTTAG | 2241 | 44.0 | MAVKQVLLPSLQFTRCLIQFLLLSWISASLPSARAITDASDVQALQVMYTALNSPPQLTGWKSSGGDPCGQSWVGVTCAGSAVVFVEIRGLGLNGTLGYLLSDLVSLKILDLSDNMLHDTLPYQLPPNLSSLNLASNNFTGNLPYSIANMVSLSYLNISRNSVSQSIGDIFSNLPALITVDLSFNNFSGELPVSFGLLSNLSSLYLANNLLTGTLSNLRNLTLNTLNVENNNFSGWIPPELISIPNFIYGGNSFDNGPAPPPPPFSVPPPAKAQNKSNHSGSGTNITDSSDESSQSNKGLQIGAIIGIILGVVILTLIALAILVFCVRKNKKNNGRRRASSGNLAIGTTSVNADIQDQRVKSVAAVADLKPLPSEKITAERVHWKNGSVNRVKSPITATSHTVASLQTATNSFSQDYLIGEGSLGRVYRAEFSNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHPNIVTLGGYCAEHGQRLLVYEYIGNGSLHDMLHFADDSSKALPWNARVRVALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERHVSAQMIGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPSLNGMYPAKSLSRFADVIALCVQVNLICYFDALSLSSFHPLVPLLFVQPEPEFRPPMSEVVQALVRLVQRASVVKRHTSDESSFLYRTPDHKALEMSF | 746 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 12958518 | 12963010 | - | Conep05aG0190500.1 | Cone5ag1846 | 438864 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag1846 | 746 | Pfam | Leucine rich repeat N-terminal domain | 39 | 78 | IPR013210 | - | |
Cone5ag1846 | 746 | CDD | STKc_IRAK | 419 | 715 | - | - | |
Cone5ag1846 | 746 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 3 | 38 | 265 | - | - | |
Cone5ag1846 | 746 | SUPERFAMILY | L domain-like | 38 | 246 | - | - | |
Cone5ag1846 | 746 | Gene3D | Ribonuclease Inhibitor | 37 | 285 | IPR032675 | - | |
Cone5ag1846 | 746 | SUPERFAMILY | Protein kinase-like (PK-like) | 400 | 707 | IPR011009 | - | |
Cone5ag1846 | 746 | MobiDBLite | consensus disorder prediction | 271 | 294 | - | - | |
Cone5ag1846 | 746 | Gene3D | Transferase(Phosphotransferase) domain 1 | 491 | 675 | - | - | |
Cone5ag1846 | 746 | MobiDBLite | consensus disorder prediction | 258 | 294 | - | - | |
Cone5ag1846 | 746 | ProSiteProfiles | Leucine-rich repeat profile. | 200 | 222 | IPR001611 | GO:0005515(InterPro) | |
Cone5ag1846 | 746 | Pfam | Leucine Rich Repeat | 177 | 196 | IPR001611 | GO:0005515(InterPro) | |
Cone5ag1846 | 746 | Pfam | Leucine Rich Repeat | 223 | 241 | IPR001611 | GO:0005515(InterPro) | |
Cone5ag1846 | 746 | Pfam | Leucine Rich Repeat | 128 | 150 | IPR001611 | GO:0005515(InterPro) | |
Cone5ag1846 | 746 | Pfam | Protein kinase domain | 416 | 628 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone5ag1846 | 746 | FunFam | Protein STRUBBELIG-RECEPTOR FAMILY 8 | 378 | 490 | - | - | |
Cone5ag1846 | 746 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 491 | 674 | - | - | |
Cone5ag1846 | 746 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 | 171 | 717 | IPR046959 | - | |
Cone5ag1846 | 746 | ProSiteProfiles | Protein kinase domain profile. | 413 | 690 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone5ag1846 | 746 | Gene3D | Phosphorylase Kinase; domain 1 | 375 | 490 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag1436 | Cone-Chr12:10403858 | Cone5ag1846 | Cone-Chr5:12958518 | 3.21E-125 | dispersed | |
Cone13ag0544 | Cone-Chr13:5698440 | Cone5ag1846 | Cone-Chr5:12958518 | 5.49E-78 | dispersed | |
Cone19ag0495 | Cone-Chr19:4088921 | Cone5ag1846 | Cone-Chr5:12958518 | 7.61E-139 | dispersed | |
Cone5ag1846 | Cone-Chr5:12958518 | Cone7ag0827 | Cone-Chr7:6173636 | 1.32E-165 | dispersed | |
Cone1ag0021 | Cone-Chr1:152551 | Cone5ag1846 | Cone-Chr5:12958518 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
82899 | PF05450 | Nicastrin | 3.70E-09 | CL0035 | Cone | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag1846 | - | - | - | 0.0 |