Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1846 ATGGCTGTCAAACAAGTGCTTCTTCCTTCTCTCCAGTTTACTCGCTGTCTCATTCAGTTCCTGCTTCTCTCCTGGATTTCTGCTTCTCTTCCTTCTGCTCGTGCTATCACTGATGCCTCTGACGTTCAAGCTCTGCAGGTCATGTACACGGCATTAAACAGTCCTCCTCAGCTAACTGGTTGGAAAAGCAGTGGAGGCGATCCTTGTGGACAGTCGTGGGTCGGGGTCACCTGTGCCGGATCCGCTGTTGTTTTCGTTGAGATTCGTGGGTTAGGTCTTAATGGAACATTGGGATACTTACTCTCCGACCTTGTCTCATTGAAAATACTTGATTTGAGTGACAACATGCTTCATGATACTCTCCCATACCAGCTACCACCAAATCTTTCAAGCCTAAATCTTGCCAGCAACAATTTTACCGGGAATCTTCCCTATTCCATTGCCAATATGGTTTCATTAAGTTATTTGAACATTAGTCGAAATTCAGTCTCCCAGTCAATTGGAGACATTTTCAGTAATCTTCCTGCCCTCATAACCGTGGATCTTTCTTTCAACAACTTCTCAGGGGAGCTTCCGGTTTCCTTTGGCTTATTGTCCAATCTTTCTTCCCTCTATCTAGCAAACAATCTGTTGACTGGCACACTCAGTAACCTTAGAAATTTGACTTTAAATACTCTAAATGTTGAAAACAATAACTTCAGTGGATGGATACCACCCGAGCTAATTTCAATTCCGAATTTCATATACGGTGGAAATTCATTTGATAATGGCCCTGCACCTCCTCCGCCACCGTTTAGTGTTCCTCCTCCCGCAAAAGCTCAAAATAAATCAAACCACTCTGGATCTGGAACCAATATCACCGACTCTAGTGATGAATCATCTCAATCAAACAAAGGCTTGCAAATAGGGGCTATTATAGGCATAATTCTGGGTGTTGTCATTCTTACTCTCATTGCATTAGCAATTCTTGTCTTCTGTGTTCGAAAGAATAAAAAGAACAATGGCCGAAGAAGAGCTTCCAGTGGAAATCTCGCTATTGGCACAACTAGTGTAAATGCTGATATTCAAGACCAAAGGGTGAAAAGTGTGGCGGCTGTTGCGGATCTGAAACCCCTTCCTTCTGAAAAGATCACAGCTGAGAGGGTTCATTGGAAAAATGGATCTGTTAATAGGGTAAAGTCACCTATAACTGCTACCTCTCACACTGTTGCTTCTCTCCAGACAGCCACTAATAGCTTCAGCCAAGACTATCTAATTGGCGAAGGCTCACTTGGACGTGTTTACAGAGCAGAGTTCTCCAATGGGAAGATAATGGCTATCAAAAAGATCGACAATGCAGCACTGTCACTACAGGAGGAAGACAATTTTCTTGAAGCCGTCTCAAATATGTCAAGATTGAGGCACCCAAACATTGTTACACTTGGTGGATATTGTGCAGAACATGGTCAACGTCTTCTAGTCTATGAGTATATCGGAAATGGAAGTCTGCACGACATGCTCCATTTCGCTGATGATAGCAGCAAGGCTTTGCCTTGGAATGCACGTGTTAGGGTAGCTCTTGGCACTGCTCGAGCCCTAGAATATTTGCACGAGGTGTGCTTGCCTTCTGTTGTGCATAGAAATTTCAAGTCAGCAAACATTCTACTTGATGAAGAGCTCAATCCTCACCTATCAGACTGTGGTCTAGCTGCTCTAACACCCAACACAGAGCGACATGTTTCAGCTCAGATGATTGGTTCATTTGGTTATAGTGCTCCTGAATTTGCCTTATCAGGAATATACACTGTCAAAAGTGATGTGTACAGCTTTGGGGTGGTCATGTTGGAACTCTTAACTGGTCGGAAACCTCTTGACAGTTCAAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCGACTCCTCAACTCCATGACATAGATGCATTAGCAAAAATGGTTGATCCTTCTTTGAATGGCATGTACCCGGCCAAGTCTCTGTCACGTTTTGCAGATGTCATTGCCCTCTGCGTCCAGGTAAATTTGATTTGCTATTTTGATGCATTGTCTTTGTCATCTTTCCATCCTCTGGTTCCATTGCTTTTTGTACAGCCGGAACCTGAATTTAGGCCTCCCATGTCTGAAGTGGTGCAAGCACTAGTACGGTTAGTGCAGAGGGCTAGTGTGGTGAAAAGGCATACCAGCGATGAATCCAGTTTCTTGTACAGGACCCCGGATCACAAAGCACTTGAGATGTCATTTTAG 2241 44.0 MAVKQVLLPSLQFTRCLIQFLLLSWISASLPSARAITDASDVQALQVMYTALNSPPQLTGWKSSGGDPCGQSWVGVTCAGSAVVFVEIRGLGLNGTLGYLLSDLVSLKILDLSDNMLHDTLPYQLPPNLSSLNLASNNFTGNLPYSIANMVSLSYLNISRNSVSQSIGDIFSNLPALITVDLSFNNFSGELPVSFGLLSNLSSLYLANNLLTGTLSNLRNLTLNTLNVENNNFSGWIPPELISIPNFIYGGNSFDNGPAPPPPPFSVPPPAKAQNKSNHSGSGTNITDSSDESSQSNKGLQIGAIIGIILGVVILTLIALAILVFCVRKNKKNNGRRRASSGNLAIGTTSVNADIQDQRVKSVAAVADLKPLPSEKITAERVHWKNGSVNRVKSPITATSHTVASLQTATNSFSQDYLIGEGSLGRVYRAEFSNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHPNIVTLGGYCAEHGQRLLVYEYIGNGSLHDMLHFADDSSKALPWNARVRVALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERHVSAQMIGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPSLNGMYPAKSLSRFADVIALCVQVNLICYFDALSLSSFHPLVPLLFVQPEPEFRPPMSEVVQALVRLVQRASVVKRHTSDESSFLYRTPDHKALEMSF 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12958518 12963010 - Conep05aG0190500.1 Cone5ag1846 438864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1846 746 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Cone5ag1846 746 CDD STKc_IRAK 419 715 - -
Cone5ag1846 746 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 38 265 - -
Cone5ag1846 746 SUPERFAMILY L domain-like 38 246 - -
Cone5ag1846 746 Gene3D Ribonuclease Inhibitor 37 285 IPR032675 -
Cone5ag1846 746 SUPERFAMILY Protein kinase-like (PK-like) 400 707 IPR011009 -
Cone5ag1846 746 MobiDBLite consensus disorder prediction 271 294 - -
Cone5ag1846 746 Gene3D Transferase(Phosphotransferase) domain 1 491 675 - -
Cone5ag1846 746 MobiDBLite consensus disorder prediction 258 294 - -
Cone5ag1846 746 ProSiteProfiles Leucine-rich repeat profile. 200 222 IPR001611 GO:0005515(InterPro)
Cone5ag1846 746 Pfam Leucine Rich Repeat 177 196 IPR001611 GO:0005515(InterPro)
Cone5ag1846 746 Pfam Leucine Rich Repeat 223 241 IPR001611 GO:0005515(InterPro)
Cone5ag1846 746 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515(InterPro)
Cone5ag1846 746 Pfam Protein kinase domain 416 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1846 746 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 378 490 - -
Cone5ag1846 746 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 491 674 - -
Cone5ag1846 746 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 171 717 IPR046959 -
Cone5ag1846 746 ProSiteProfiles Protein kinase domain profile. 413 690 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1846 746 Gene3D Phosphorylase Kinase; domain 1 375 490 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1436 Cone-Chr12:10403858 Cone5ag1846 Cone-Chr5:12958518 3.21E-125 dispersed
Cone13ag0544 Cone-Chr13:5698440 Cone5ag1846 Cone-Chr5:12958518 5.49E-78 dispersed
Cone19ag0495 Cone-Chr19:4088921 Cone5ag1846 Cone-Chr5:12958518 7.61E-139 dispersed
Cone5ag1846 Cone-Chr5:12958518 Cone7ag0827 Cone-Chr7:6173636 1.32E-165 dispersed
Cone1ag0021 Cone-Chr1:152551 Cone5ag1846 Cone-Chr5:12958518 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82899 PF05450 Nicastrin 3.70E-09 CL0035 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1846 - - - 0.0