Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1846 ATGGCTGTCAAACAAGTGCTTCTTCCTTCTCTCCAGTTTACTCGCTGTCTCATTCAGTTCCTGCTTCTCTCCTGGATTTCTGCTTCTCTTCCTTCTGCTCGTGCTATCACTGATGCCTCTGACGTTCAAGCTCTGCAGGTCATGTACACGGCATTAAACAGTCCTCCTCAGCTAACTGGTTGGAAAAGCAGTGGAGGCGATCCTTGTGGACAGTCGTGGGTCGGGGTCACCTGTGCCGGATCCGCTGTTGTTTTCGTTGAGATTCGTGGGTTAGGTCTTAATGGAACATTGGGATACTTACTCTCCGACCTTGTCTCATTGAAAATACTTGATTTGAGTGACAACATGCTTCATGATACTCTCCCATACCAGCTACCACCAAATCTTTCAAGCCTAAATCTTGCCAGCAACAATTTTACCGGGAATCTTCCCTATTCCATTGCCAATATGGTTTCATTAAGTTATTTGAACATTAGTCGAAATTCAGTCTCCCAGTCAATTGGAGACATTTTCAGTAATCTTCCTGCCCTCATAACCGTGGATCTTTCTTTCAACAACTTCTCAGGGGAGCTTCCGGTTTCCTTTGGCTTATTGTCCAATCTTTCTTCCCTCTATCTAGCAAACAATCTGTTGACTGGCACACTCAGTAACCTTAGAAATTTGACTTTAAATACTCTAAATGTTGAAAACAATAACTTCAGTGGATGGATACCACCCGAGCTAATTTCAATTCCGAATTTCATATACGGTGGAAATTCATTTGATAATGGCCCTGCACCTCCTCCGCCACCGTTTAGTGTTCCTCCTCCCGCAAAAGCTCAAAATAAATCAAACCACTCTGGATCTGGAACCAATATCACCGACTCTAGTGATGAATCATCTCAATCAAACAAAGGCTTGCAAATAGGGGCTATTATAGGCATAATTCTGGGTGTTGTCATTCTTACTCTCATTGCATTAGCAATTCTTGTCTTCTGTGTTCGAAAGAATAAAAAGAACAATGGCCGAAGAAGAGCTTCCAGTGGAAATCTCGCTATTGGCACAACTAGTGTAAATGCTGATATTCAAGACCAAAGGGTGAAAAGTGTGGCGGCTGTTGCGGATCTGAAACCCCTTCCTTCTGAAAAGATCACAGCTGAGAGGGTTCATTGGAAAAATGGATCTGTTAATAGGGTAAAGTCACCTATAACTGCTACCTCTCACACTGTTGCTTCTCTCCAGACAGCCACTAATAGCTTCAGCCAAGACTATCTAATTGGCGAAGGCTCACTTGGACGTGTTTACAGAGCAGAGTTCTCCAATGGGAAGATAATGGCTATCAAAAAGATCGACAATGCAGCACTGTCACTACAGGAGGAAGACAATTTTCTTGAAGCCGTCTCAAATATGTCAAGATTGAGGCACCCAAACATTGTTACACTTGGTGGATATTGTGCAGAACATGGTCAACGTCTTCTAGTCTATGAGTATATCGGAAATGGAAGTCTGCACGACATGCTCCATTTCGCTGATGATAGCAGCAAGGCTTTGCCTTGGAATGCACGTGTTAGGGTAGCTCTTGGCACTGCTCGAGCCCTAGAATATTTGCACGAGGTGTGCTTGCCTTCTGTTGTGCATAGAAATTTCAAGTCAGCAAACATTCTACTTGATGAAGAGCTCAATCCTCACCTATCAGACTGTGGTCTAGCTGCTCTAACACCCAACACAGAGCGACATGTTTCAGCTCAGATGATTGGTTCATTTGGTTATAGTGCTCCTGAATTTGCCTTATCAGGAATATACACTGTCAAAAGTGATGTGTACAGCTTTGGGGTGGTCATGTTGGAACTCTTAACTGGTCGGAAACCTCTTGACAGTTCAAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCGACTCCTCAACTCCATGACATAGATGCATTAGCAAAAATGGTTGATCCTTCTTTGAATGGCATGTACCCGGCCAAGTCTCTGTCACGTTTTGCAGATGTCATTGCCCTCTGCGTCCAGGTAAATTTGATTTGCTATTTTGATGCATTGTCTTTGTCATCTTTCCATCCTCTGGTTCCATTGCTTTTTGTACAGCCGGAACCTGAATTTAGGCCTCCCATGTCTGAAGTGGTGCAAGCACTAGTACGGTTAGTGCAGAGGGCTAGTGTGGTGAAAAGGCATACCAGCGATGAATCCAGTTTCTTGTACAGGACCCCGGATCACAAAGCACTTGAGATGTCATTTTAG 2241 44.0 MAVKQVLLPSLQFTRCLIQFLLLSWISASLPSARAITDASDVQALQVMYTALNSPPQLTGWKSSGGDPCGQSWVGVTCAGSAVVFVEIRGLGLNGTLGYLLSDLVSLKILDLSDNMLHDTLPYQLPPNLSSLNLASNNFTGNLPYSIANMVSLSYLNISRNSVSQSIGDIFSNLPALITVDLSFNNFSGELPVSFGLLSNLSSLYLANNLLTGTLSNLRNLTLNTLNVENNNFSGWIPPELISIPNFIYGGNSFDNGPAPPPPPFSVPPPAKAQNKSNHSGSGTNITDSSDESSQSNKGLQIGAIIGIILGVVILTLIALAILVFCVRKNKKNNGRRRASSGNLAIGTTSVNADIQDQRVKSVAAVADLKPLPSEKITAERVHWKNGSVNRVKSPITATSHTVASLQTATNSFSQDYLIGEGSLGRVYRAEFSNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHPNIVTLGGYCAEHGQRLLVYEYIGNGSLHDMLHFADDSSKALPWNARVRVALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERHVSAQMIGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPSLNGMYPAKSLSRFADVIALCVQVNLICYFDALSLSSFHPLVPLLFVQPEPEFRPPMSEVVQALVRLVQRASVVKRHTSDESSFLYRTPDHKALEMSF 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12958518 12963010 - Conep05aG0190500.1 Cone5ag1846 438864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1846 746 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Cone5ag1846 746 CDD STKc_IRAK 419 715 - -
Cone5ag1846 746 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 38 265 - -
Cone5ag1846 746 SUPERFAMILY L domain-like 38 246 - -
Cone5ag1846 746 Gene3D Ribonuclease Inhibitor 37 285 IPR032675 -
Cone5ag1846 746 SUPERFAMILY Protein kinase-like (PK-like) 400 707 IPR011009 -
Cone5ag1846 746 MobiDBLite consensus disorder prediction 271 294 - -
Cone5ag1846 746 Gene3D Transferase(Phosphotransferase) domain 1 491 675 - -
Cone5ag1846 746 MobiDBLite consensus disorder prediction 258 294 - -
Cone5ag1846 746 ProSiteProfiles Leucine-rich repeat profile. 200 222 IPR001611 GO:0005515(InterPro)
Cone5ag1846 746 Pfam Leucine Rich Repeat 177 196 IPR001611 GO:0005515(InterPro)
Cone5ag1846 746 Pfam Leucine Rich Repeat 223 241 IPR001611 GO:0005515(InterPro)
Cone5ag1846 746 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515(InterPro)
Cone5ag1846 746 Pfam Protein kinase domain 416 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1846 746 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 378 490 - -
Cone5ag1846 746 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 491 674 - -
Cone5ag1846 746 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 171 717 IPR046959 -
Cone5ag1846 746 ProSiteProfiles Protein kinase domain profile. 413 690 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag1846 746 Gene3D Phosphorylase Kinase; domain 1 375 490 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1846 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1436 Cone-Chr12:10403858 Cone5ag1846 Cone-Chr5:12958518 3.21E-125 dispersed
Cone13ag0544 Cone-Chr13:5698440 Cone5ag1846 Cone-Chr5:12958518 5.49E-78 dispersed
Cone19ag0495 Cone-Chr19:4088921 Cone5ag1846 Cone-Chr5:12958518 7.61E-139 dispersed
Cone5ag1846 Cone-Chr5:12958518 Cone7ag0827 Cone-Chr7:6173636 1.32E-165 dispersed
Cone1ag0021 Cone-Chr1:152551 Cone5ag1846 Cone-Chr5:12958518 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone17ag0031 . 384 668 Strubbelig Receptor Gene Family AT1G11130 53.0 1.5e-81 301.6
Cone4ag0853 . 404 690 Strubbelig Receptor Gene Family AT1G11130 51.6 8.0e-80 295.8
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone4ag0853 . 3 719 Strubbelig Receptor Gene Family AT1G53730 64.8 2.1e-208 723.0
Cone7ag0827 . 1 691 Strubbelig Receptor Gene Family AT1G53730 61.2 4.7e-208 721.8
Cone17ag0031 . 5 668 Strubbelig Receptor Gene Family AT1G53730 57.4 7.2e-164 575.1
Cone1ag0021 . 1 659 Strubbelig Receptor Gene Family AT1G53730 52.5 1.4e-156 550.8
Cone4ag0869 . 11 699 Strubbelig Receptor Gene Family AT1G53730 51.0 8.8e-154 541.6
Cone7ag0827 . 10 679 Strubbelig Receptor Gene Family AT3G14350 59.6 4.6e-184 642.1
Cone4ag0853 . 13 707 Strubbelig Receptor Gene Family AT3G14350 60.2 6.6e-183 638.3
Cone20ag1372 . 25 168 Strubbelig Receptor Gene Family AT3G14350 69.4 8.4e-45 179.5
Cone1ag0021 . 103 674 Strubbelig Receptor Gene Family AT4G22130 63.5 8.0e-187 651.0
Cone5ag1846 . 150 746 Strubbelig Receptor Gene Family AT4G22130 60.4 1.6e-179 626.7
Cone7ag0827 . 367 682 Strubbelig Receptor Gene Family AT4G22130 65.3 5.1e-117 419.1
Cone4ag0853 . 395 710 Strubbelig Receptor Gene Family AT4G22130 65.3 1.9e-116 417.2
Cone17ag0031 . 329 668 Strubbelig Receptor Gene Family AT4G22130 59.2 7.9e-110 395.2
Cone8ag1487 . 482 783 Strubbelig Receptor Gene Family AT4G22130 61.7 2.4e-106 383.6
Cone12ag1436 . 468 769 Strubbelig Receptor Gene Family AT4G22130 61.1 1.3e-104 377.9
Cone4ag0869 . 367 700 Strubbelig Receptor Gene Family AT4G22130 53.5 6.7e-101 365.5
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT4G22130 61.0 5.3e-98 355.9
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT4G22130 59.6 1.9e-95 347.4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82899 PF05450 Nicastrin 3.70E-09 CL0035 Cone PK