Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1852 ATGGACAAAGGATGGAGACTAACCCTTCCCGATCCTAAATCTAGGTTGTTCTTCTTAAACAAGACGCCAGCAGCTCAACAAGCTTATTCTCTTTTAGACGGCCTTGACCCTTCTTCCAGAAACAACAACATCATAGGCGCTGATCAACGGTGTCTTCCTCATCAACCGGCGAGAATGTTTCAGGGTATTCAATTTCCGTTGAAGCTCCGTCGAACCAGCGGAGAAGAAGTAGAGGAGGATAGTCAAGCTGCAGCTGCTCCGACACAGTCTGATCTTGACCAAGATCACGAGAACCGATTGGTTGTGGATGAAGTGGATTTCTTCTCGGATAAGAAAAGGGTGGTTGATAATTATGTGGGTGATGATCATGACGCCGATAAGGATGTCAAGAAGACTAGTGTGATTAGTGTCAAGAAGGAAAAGGACAGTATATCTCATGGAGATCAAGTGCCTCAGCTGTCTCATCACTTGAATATTGCCAATGTTAATACTGGTTTACACCTGCAAACTGCCAACACTGGAAGCGACCAATCAACCGTGGATGACGGGATTTCAACGGACGCCGAGGATAAGAGAGCCAAGAATATGGAGCTGGCACAGCTGCAAGTGGAGCTTCAACGCATGTTAACGGAGAATCAGAAGTTGAGAGAGATGCTAAGCCAAGTGAACAGCAACTACCATTCTCTGCAGATGCGTTTTATGTCATTCATGCAGCACCAGCACCAGCAACAGCAACAGCACCACCAACTTCAGAATAACGTTGATCAAGGACAATCTGGTAATCATGATGAGAAACACGAATCTGTTGGAGGTAGAGTGGTGGTTCCAAGACAATTTATGGATCCAGGGCCAGTCTCTGAAACCGATCATGAGGCCGTGTCTCATTCTTCTTCCGATGAAAGAACTCGTTCTGGAACCCCCCTTGGTCACTCTGAAAAGATCAAGACTAGTACAAGTACTACTCCGCCTCCCAAAAATGCTGATCCTTCAATACCATTTGATCATCACGCGACCGACACTGACTCTGGTTTCAGAGATGGAAAGAGAATTGCAAGGGAGGAGAGCCCTGAATCAGAGTCACATGGTTGGGGTCCTAACAAAGTTGCTAAATTGAGCTCCCCAAAACCCATTGATCAATCGACTGAGGCCACCATGAGGAAAGCCCGCGTTTCTGTTCGTGCTCGTTCAGAAGCTCCCATGATTACAGATGGGTGCCAATGGCGGAAATATGGACAAAAGATGGCAAAAGGGAACCCATGTCCAAGAGCTTATTATAGGTGCACCATGTCAGTTGGCTGTCCGGTTCGCAAACAAGTTCAACGGTGTGCGGAAGACAGAAGCATATTGATAACAACGTACGAGGGCAACCACAACCACCCTCTCCCTCCAGCAGCGATGGTCATGGCATCAACAACAGCCGCAGCTGCAAGCATGTTGCTGTCAGGGAGCCTGCCCAGTGCAGACGGGCTCATGAACCCTAATCTGCTAGCCAGAGCCATTCTTCCAAACTGCTCGTCCAGCATGGCCACCATTTCAGCATCAGCTCCATTTCCAACAGTAACCTTGGACCTCACTCACTCCCCAGGCCCCAACCCCTTGCAGTTCCAGCAGGCCCAGCAGATGAGACCAGCTGTTTCCACCACACAATTCCAGCTTCCTACTTTCCATCACGGCAACGGCAACGTCCCTCATCATCAGTTGCCTCAGGTTTTAAGTAAAGCACTACTCTACAACCAGTCCATGTTCTCGGGCCTCCAGCTCTCCGGCGCTGGTCATGACATTCTGTCTGCCCACAGTTTAGCACAACAAGTTACTCCACAGCCGCTTTCTGATACATTAAGCGCTGCTACTGCCGCCATCACTTCTGATCCAAACTTTACAGCAGCTCTTGCAGCTGCCATTTCTTCCATCATCGGTGGGGCTCACCCCAACAATAATAGCGGTAGCAACGGCAACAGTACTAGCAACAAAGTCAGCAGTTTTCTAGGAAATTAA 1995 48.62 MDKGWRLTLPDPKSRLFFLNKTPAAQQAYSLLDGLDPSSRNNNIIGADQRCLPHQPARMFQGIQFPLKLRRTSGEEVEEDSQAAAAPTQSDLDQDHENRLVVDEVDFFSDKKRVVDNYVGDDHDADKDVKKTSVISVKKEKDSISHGDQVPQLSHHLNIANVNTGLHLQTANTGSDQSTVDDGISTDAEDKRAKNMELAQLQVELQRMLTENQKLREMLSQVNSNYHSLQMRFMSFMQHQHQQQQQHHQLQNNVDQGQSGNHDEKHESVGGRVVVPRQFMDPGPVSETDHEAVSHSSSDERTRSGTPLGHSEKIKTSTSTTPPPKNADPSIPFDHHATDTDSGFRDGKRIAREESPESESHGWGPNKVAKLSSPKPIDQSTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMSVGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAMVMASTTAAAASMLLSGSLPSADGLMNPNLLARAILPNCSSSMATISASAPFPTVTLDLTHSPGPNPLQFQQAQQMRPAVSTTQFQLPTFHHGNGNVPHHQLPQVLSKALLYNQSMFSGLQLSGAGHDILSAHSLAQQVTPQPLSDTLSAATAAITSDPNFTAALAAAISSIIGGAHPNNNSGSNGNSTSNKVSSFLGN 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12997959 13000751 + Conep05aG0191100.1 Cone5ag1852 438870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1852 664 MobiDBLite consensus disorder prediction 332 360 - -
Cone5ag1852 664 MobiDBLite consensus disorder prediction 299 324 - -
Cone5ag1852 664 ProSiteProfiles WRKY domain profile. 396 462 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag1852 664 MobiDBLite consensus disorder prediction 237 382 - -
Cone5ag1852 664 SUPERFAMILY WRKY DNA-binding domain 394 462 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag1852 664 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 179 644 IPR044810 GO:0003700(InterPro)
Cone5ag1852 664 MobiDBLite consensus disorder prediction 643 664 - -
Cone5ag1852 664 MobiDBLite consensus disorder prediction 237 258 - -
Cone5ag1852 664 FunFam probable WRKY transcription factor 31 386 463 - -
Cone5ag1852 664 Pfam WRKY DNA -binding domain 403 460 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag1852 664 MobiDBLite consensus disorder prediction 71 96 - -
Cone5ag1852 664 Coils Coil 191 232 - -
Cone5ag1852 664 Gene3D WRKY domain 386 463 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone5ag1852 664 SMART WRKY_cls 401 461 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1852 Cone-Chr5:12997959 Cone8ag1424 Cone-Chr8:11102295 4.90E-91 dispersed
Cone1ag0014 Cone-Chr1:120101 Cone5ag1852 Cone-Chr5:12997959 0 wgd
Cone20ag0815 Cone-Chr20:5790000 Cone5ag1852 Cone-Chr5:12997959 2.46E-20 wgd
Cone3ag1328 Cone-Chr3:32232091 Cone5ag1852 Cone-Chr5:12997959 1.30E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46252 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1852 - - - 0.0