Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag1860 ATGTCTTGCTCCAATTTGACTTCGTGGATGTCCTCCAAACCCTCTCTCTCCGACTCCTCCTCGCCCCTCTCATTCCGTTATTTTCTCAACCTTTTTCAGCTTCCTTCCCACACTGTCTACCAGTCACGGTCCTCATCGGCAACCCCTATTCAGTGTGGGCTCCGCGAGCTCCGAGAGAGAATTGGCTCCGTCAAGAATACCCAGAAGATAACGGAGGCTATGAAGCTTGTTGCTGCTGCCAAAGTTCGAAGAGCTCAAGAAGCTGTTGTCAACGGACGACCCTTCTCCGAAACTCTGGTCGAAGTTCTTTACAACATCAATGAGCAGGTCCAGACAGATGACGTGGATGTTCCGCTCACAAAGGTCAGGCCGGTCAAGAAGGTTGCCCTGGTTGTAGTCACGGGTGATCGTGGTCTTTGTGGCGGCTTCAACAACGCTATTATAAAAAAGGCGGAAGCCAGAATTGCAGAATTGAAGGGGCTTGGTGTTGCATACACTGTGATCAGTGTTGGCAAGAAGGGTAACACATATTTCTTTAGGCGGCCTTATATTCCGGTGGATAGGTTTCTGGAGGGCGGGACCCTACCAACAGCTAAAGAAGCTCAAGCCATTGCGGATGATGTATTCTCCCTCTTTGTGAGTGAAGATGTGGACAAGGTGGAGCTCTTGTACACCAAATTCGTGTCCTTGGTCAAGTCGGATCCGGTGATTCACACATTACTTCCGCTCTCGCCAAAGGGGGAGATCTGCGATTTGAATGGTAATTGCGTGGATGCTGCAGATGACGAGCTCTTCAGGCTGACCACAAAAGAAGGGAAGTTGACTGTGGAGAGGGACACCGTGAGGACAGCCACAGTTGACTTCTCGCCAATATTGGAGTTCGAGCAAGACCCGGCTCAGATACTCGATGCTCTGCTACCTCTGTATTTGAACAGCCAAATATTGAGGGCATTGCAGGAATCACTGGCCAGTGAGTTGGCTGCAAGGATGAGCGCCATGAGCAATGCAACCGACAATGCAATCGAGTTGACGAAGAACTTGTCCAGGGCCTACAATAGACAACGCCAGGCTAAAATCACTGGCGAGATTTTGGAGATTGTTGCCGGAGCTGAGGCTTTAGTCTAG 1125 50.31 MSCSNLTSWMSSKPSLSDSSSPLSFRYFLNLFQLPSHTVYQSRSSSATPIQCGLRELRERIGSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQVQTDDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNAIIKKAEARIAELKGLGVAYTVISVGKKGNTYFFRRPYIPVDRFLEGGTLPTAKEAQAIADDVFSLFVSEDVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDLNGNCVDAADDELFRLTTKEGKLTVERDTVRTATVDFSPILEFEQDPAQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNAIELTKNLSRAYNRQRQAKITGEILEIVAGAEALV 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13031201 13032970 - Conep05aG0192000.1 Cone5ag1860 438878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag1860 374 Hamap ATP synthase gamma chain [atpG]. 51 373 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone5ag1860 374 CDD F1-ATPase_gamma 54 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone5ag1860 374 Pfam ATP synthase 54 373 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone5ag1860 374 Gene3D ATP synthase, gamma subunit, helix hairpin domain 52 120 - -
Cone5ag1860 374 Gene3D ATP synthase, gamma subunit, helix hairpin domain 271 373 - -
Cone5ag1860 374 FunFam ATP synthase gamma chain, chloroplastic 121 244 - -
Cone5ag1860 374 Gene3D - 121 244 - -
Cone5ag1860 374 PANTHER ATP SYNTHASE GAMMA CHAIN 1 373 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Cone5ag1860 374 FunFam ATP synthase gamma chain, chloroplastic 52 119 - -
Cone5ag1860 374 NCBIfam ATP synthase F1 subunit gamma 53 373 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone5ag1860 374 FunFam ATP synthase gamma chain, chloroplastic 270 373 - -
Cone5ag1860 374 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 53 373 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone5ag1860 374 PRINTS ATP synthase gamma subunit signature 320 339 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone5ag1860 374 PRINTS ATP synthase gamma subunit signature 125 144 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone5ag1860 374 PRINTS ATP synthase gamma subunit signature 351 372 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone5ag1860 374 PRINTS ATP synthase gamma subunit signature 218 235 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone5ag1860 374 ProSitePatterns ATP synthase gamma subunit signature. 359 372 IPR023632 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1860 Cone-Chr5:13031201 Cone6ag1091 Cone-Chr6:6652794 4.04E-189 dispersed
Cone1ag0006 Cone-Chr1:78278 Cone5ag1860 Cone-Chr5:13031201 1.13E-235 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag1860 K02115 - csv:101214408 579.711