Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0001 ATGCCACAGGAAAGTAATACTAATAGTGGTCTCATGTTCGCGTCTCCTAACAAGAACTTGAGAGGACTAAAGGCTGGACCCCATTTGGTCTCTAACACTCAGCCTAATTCCTTCACCGAGGAGATCATCAACGACCATGAATTGGCTCAGAGGAAAGCTGAAGAAGCAGGTTCAAGGAGGTGCCAAGCAGCAGAATGGTTATGTGAGATGGACGACCGAGCAGCAGTGACGCTGCCTAATCAACCATCTGAAGAACAATTCCGCCTTGCACTCCACAATGGCCTCATTCTCTGCAACGTCTTAAATAAAGTCAATCCTGGAGCTGTTCTCAAGGTAGTATTGAATCCCATTATAGCAATTCTGACATCAGAGGGAGCTGCACAATCTGCCATTCAGTACTTTGAGAACATGAGAAATTTCTTGGAGGCTGTTAAAAACATGAAGCTCTTGACGTTTGAAGCATCTGATTTGGAAAAGGGCGGTTCGTCAAGTAAAGTTGTAGATTGTATCCTCTGTCTAAAAGGTTATTATGAGTGGAAGCAAGCGGGTGGAGTTGGGGTTTGGAGGTATGGGGGGACTGTGAGGATTACTTCCTTCCCCAACCCCAAGGGATCATCGTCCTCTTCGGCTGGAAGTGAATGTACTGATGAATCGATTGATGAATATGAATCATCACAGTATGAGCAGCTATTGGAGTTTCTTAATCTTTCTGATCAAGTCTCAATCGAACAATCTAGAATTTCATCTGTGCTGCCTTTTCTATTTGATCATTTTGGACTCAGACAACTACAGGCTTACCTGCGGGAGGACAGTGAGTTTGAAGACTTGCCTTTGAATGCAATGGTAATTGATGCATTGCTCGGTAAGGTTGTCAACGACTTCTCTACAATGGTCGTCTCTCAAGGCAAACAGCTAGGATTGTTTCTGAAGAATATATTGAAAAGTAATATCGGTTCTATATCGAATTTTCAATTTCTAGAGGCCATTTCCCGTTATCTTGATCGAAGAGTGAGTCAGGTATCAAAGGATTTTGCCAAATTTTGTGTCTGTGGGAATAAACCTAAGGCTATTCAGCGCAAGGACAGCATTCCAGCGGAAGCATTTAATATTCACACAAAAAAGCTAGAGGAACTAAACTCGTCACTTCAAGAGACAAAACTAGAAGTCAAACAGGCTCAATCAGAGTGGGAGAAAGAAGTTACAAGACTATATCATTATCTCAAGGGCCTACAGATGGCTTCCTCTTCTTATCACAAGGTGTTAGAGGAAAATCGCAGTTTGTACAATCAAGTCCAGGACCTCAAAGGAACCGTCCGCATCTACTGCAGAGTAAGGCCTTTCTTAACAGGCCAGTTAAATATGCAGTCCACCGTAGACTATATTGGAGAAAATGGAAATATCATGATCATGAACCCCCTAAAACAAGGCAGAGATTTATTTTCATTTAACAAAGTGTTTGGGACAGATGTTACACAAGATCAAATATATATCGACACTCAACCACTGATCAGGTCTGTTCTGGATGGTTTTAATGTATGCATCTTTGCATATGGACAGACTGGCTCAGGCAAGACATACACAATGACTGGCCCCAATTCGATGACCAGGGAGACCTGGGGAGTAAATTATCGAGCTCTACGGGACTTGTTTCAGATATCGAAAGCAAGAGTGGATATGGTAAAATATGAAGTTGGAGTTCAGATGATTGAGATATATAATGAACAAGTGAGAGACCTATTAGTCAATACCAGTGGACTAAATGTACCGGATGCAAGTTGGGTTCAGATAACCTGTACACAGGATGTTCTTGATTGGATGAAGGTTGGTCAAAAGAATCGTGCTGTAGGTGCTACAGCTCTAAATGAGAGAAGTAGCCGTTCTCATAGTGTATTAACAGTTCATGTCCATGGAAGAGAATTGGCCTCGGGTACCATTCTTAGAGGTTGCCTTCATCTGGTAGATTTGGCTGGAAGCAAAAGAGTGGATAAATCCGAGGCTGTTGTTGAAAGGCTCAAGGAAGCACAACACATAAATAAATCACTCTCTGCACTTGGAGATGTTTTTTACGCTCTTGCACAAAAGAGCTCCCACATTCCTTACAGAAACAGCAAGCTTACTCAAGTGCTACAAGATTCTCTTGGCGGGCAAGCAAAAACATTGATGTTTGTGCATATAAATCCTGAAGCTAATGCTCTCGGGGAGACGATTAGCACACTCAAATTTTCTGAGAGGGTTGCCTCCATAGAATTAGGCGCAGCACGATGTAATAAAGAAACTGGTGAAATCAGAGAGCTTAAAGAAGAGATATCAAATCTAAAGTCAGCATTGAAGAGTAAGGAAACTGAAGTGAAAGGACTGAAAGGTGGGAATACTAAAACTACTACAGAAATCCAGAAAGCCAGAGCTGCTTCACCCCTTGCAAGTTCCAAGATATGGTATTGCTGCTAG 2448 42.2 MPQESNTNSGLMFASPNKNLRGLKAGPHLVSNTQPNSFTEEIINDHELAQRKAEEAGSRRCQAAEWLCEMDDRAAVTLPNQPSEEQFRLALHNGLILCNVLNKVNPGAVLKVVLNPIIAILTSEGAAQSAIQYFENMRNFLEAVKNMKLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKQAGGVGVWRYGGTVRITSFPNPKGSSSSSAGSECTDESIDEYESSQYEQLLEFLNLSDQVSIEQSRISSVLPFLFDHFGLRQLQAYLREDSEFEDLPLNAMVIDALLGKVVNDFSTMVVSQGKQLGLFLKNILKSNIGSISNFQFLEAISRYLDRRVSQVSKDFAKFCVCGNKPKAIQRKDSIPAEAFNIHTKKLEELNSSLQETKLEVKQAQSEWEKEVTRLYHYLKGLQMASSSYHKVLEENRSLYNQVQDLKGTVRIYCRVRPFLTGQLNMQSTVDYIGENGNIMIMNPLKQGRDLFSFNKVFGTDVTQDQIYIDTQPLIRSVLDGFNVCIFAYGQTGSGKTYTMTGPNSMTRETWGVNYRALRDLFQISKARVDMVKYEVGVQMIEIYNEQVRDLLVNTSGLNVPDASWVQITCTQDVLDWMKVGQKNRAVGATALNERSSRSHSVLTVHVHGRELASGTILRGCLHLVDLAGSKRVDKSEAVVERLKEAQHINKSLSALGDVFYALAQKSSHIPYRNSKLTQVLQDSLGGQAKTLMFVHINPEANALGETISTLKFSERVASIELGAARCNKETGEIRELKEEISNLKSALKSKETEVKGLKGGNTKTTTEIQKARAASPLASSKIWYCC 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14249 20380 + Conep06aG0000100.1 Cone6ag0001 438885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0001 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 783 IPR027417 -
Cone6ag0001 815 Gene3D - 49 178 IPR036872 -
Cone6ag0001 815 ProSiteProfiles Calponin homology (CH) domain profile. 57 178 IPR001715 GO:0005515(InterPro)
Cone6ag0001 815 PRINTS Kinesin heavy chain signature 649 667 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone6ag0001 815 PRINTS Kinesin heavy chain signature 618 635 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone6ag0001 815 PRINTS Kinesin heavy chain signature 698 719 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone6ag0001 815 PRINTS Kinesin heavy chain signature 509 530 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone6ag0001 815 CDD CH_AtKIN14-like 59 174 - -
Cone6ag0001 815 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 379 586 - -
Cone6ag0001 815 Coils Coil 368 395 - -
Cone6ag0001 815 FunFam Kinesin-related protein3 587 790 - -
Cone6ag0001 815 SMART ch_5 59 176 IPR001715 GO:0005515(InterPro)
Cone6ag0001 815 Pfam Kinesin motor domain 443 748 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone6ag0001 815 Coils Coil 755 782 - -
Cone6ag0001 815 SUPERFAMILY Calponin-homology domain, CH-domain 58 198 IPR036872 -
Cone6ag0001 815 Gene3D Kinesin motor domain 379 750 IPR036961 -
Cone6ag0001 815 Pfam Calponin homology (CH) domain 82 178 IPR001715 GO:0005515(InterPro)
Cone6ag0001 815 FunFam kinesin-like protein KIN-14F 49 178 - -
Cone6ag0001 815 PANTHER KINESIN-LIKE PROTEIN KLP-3 40 793 IPR027640 GO:0003777(InterPro)|GO:0007017(PANTHER)|GO:0007018(InterPro)|GO:0008017(PANTHER)|GO:0015630(PANTHER)
Cone6ag0001 815 SMART kinesin_4 435 756 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone6ag0001 815 ProSiteProfiles Kinesin motor domain profile. 437 748 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0001 K27887 - - rcu:8271851 1145.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0966 Cone-Chr20:6892237 Cone6ag0001 Cone-Chr6:14249 3.10E-221 dispersed
Cone5ag0062 Cone-Chr5:312135 Cone6ag0001 Cone-Chr6:14249 1.07E-209 dispersed
Cone6ag0001 Cone-Chr6:14249 Cone8ag0301 Cone-Chr8:1741996 1.46E-168 dispersed
Cone14ag1242 Cone-Chr14:10038504 Cone6ag0001 Cone-Chr6:14249 0 wgd
Cone15ag1267 Cone-Chr15:9978720 Cone6ag0001 Cone-Chr6:14249 0 wgd
Cone6ag0001 Cone-Chr6:14249 Cone9ag0003 Cone-Chr9:24355 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g727 Blo03g00494 . . . . . . . . . Cma01g01058 Cma09g01033 Car01g00932 Car09g00939 . Cpe06g00841 Cpe02g00838 Bhi09g01820 . . . . Mch11g1312 . . . . . . . . Cone6ag0001 Cone9ag0003 . . Lsi02g01801 Csa07g01062 . . . . . . Bpe11g00603 . . Bma14g00667 . Cmo01g01099 Cmo09g01035 . . . . . . . . . . . . . Cla09g02100 Cam09g2186 Cec09g2255 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007328 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 1 1 1 1 36