Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0007 ATGGCCCAAGTGCTTTCTCTCTACATCCTTCCGTTGGAGCTTTCCCACAAACCTTCATCCGTTCCTCCTTCTAAGCCATTGAGCCTCACGAAGACAAGTCAAAAGCCCAAGACACTGGATCCTGGTCCCAGAAAAGGTTCTAGACCTTTTCAGAAAACCCGAAAGCTGAATTTGGAGGTTTCGCCTCATAGAGCTGTTTCTGCAGTGAGACTGATGAGAATAGAGATGGGTGGTGCTTTTGCTGACCTTCTCAATGAGAAAGGGAAGGGTTCTGGTGATAATGAGATGGGATATGTCGAAAGAACTCTTGGTTTTCGCACCCGTGATTTAGAAGATTGTGATCTCAGATTGGTCACGGATATTGTTGGGGGAACCATCCGGTGGAGGAGGTATATCGATCATTTGATTGGCTCGCTATGCCATGATGAGAAAATGTTTAGAAGCATGGAACCACTTCTATTACAGATTCTCAGAATTGGTTTCTATGAAATTGTTAAGCTAGATATGCCTCCATATGCCGTTGTGGATGAGAATGTGAGGCTTGCAAAGGTGGCCCTTAGACCCGGTGCTGGTAACATGGTCAATGGCATCCTCCGGAGGCTTCTTTTGCATAAGGAATGCAACTCTCTTCCTCTACCTAAATTGGAAGGAGATAGTCGGGCACAAGCACGTGCTATAGCAACTTTGTATTCTCATCCTGTTTGGATGGTGAGGCGATGGACAAAGTTTCTTGGGCAAGAAGAAGCTATTAAGTTAATGATGTGGAACAACAGTGATCCAAGTTTTAGCTTGAGGGCAAACAGCGGAAAAGGTATTTCAAGAGCTGACCTCGTGACAAAGCTTCACTATTTAAAGGTCCCACATGAGCTTTCACTGCATTTGGATGATTTTGTCCGTATCAAAACTGGATTACAGGCAATCATACGTGCCGGATTCTTCAAAGAAGGCTTATGTTCTGTCCAAGATGAGAGTGCAGGTTTGGTAGTTTCCTTAGTTAATCCTCAGCCTGGCGAGAGCATTATTGATTGTTGTGCTGCTCCTGGAGGGAAAACTCTTTACATGGCCTCCCGTTTAAGTGGCCAAGGCAAAGTATCCGCAATTGATATTAATAAAGGTCGATTGAGAATACTCAAAGAGACTGCCAAGTTGCACCAAGTAGATGGTGTCATAACCACTGTCCATAGCGATATCCGTATTTTTTCTGAAAAAAATCCGGTCAAGCATGATAAAGTTTTGCTGGATGCTCCATGTTCAGGATTGGGTGTTCTCTCCAAGAGAGCAGACTTGCGATGGAATAGGAAATTAGAGGACATGGAGGAGCTCAAGAATCTACAGGATGAGCTACTTGATGCAGCTTCTGTATTGGTGAAGGGTGGTGGAATTTTAGTGTATAGTACGTGCTCCATAGACCCTGAAGAGAACGAGCAGAGGGTGGCTGCTTTTCTTTTGAGGCATCCGGAGTTTCACATAGATCCTGCTGACGGATACGTTCCGCATGATTTTGCAACTGAAGATGGTTACTATTTCTCACATCCAACAAGGCATTCTCTGGATGGTGCCTTTGGGGCTCGGCTGGTTCGCGACCACAACTGA 1593 45.01 MAQVLSLYILPLELSHKPSSVPPSKPLSLTKTSQKPKTLDPGPRKGSRPFQKTRKLNLEVSPHRAVSAVRLMRIEMGGAFADLLNEKGKGSGDNEMGYVERTLGFRTRDLEDCDLRLVTDIVGGTIRWRRYIDHLIGSLCHDEKMFRSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNMVNGILRRLLLHKECNSLPLPKLEGDSRAQARAIATLYSHPVWMVRRWTKFLGQEEAIKLMMWNNSDPSFSLRANSGKGISRADLVTKLHYLKVPHELSLHLDDFVRIKTGLQAIIRAGFFKEGLCSVQDESAGLVVSLVNPQPGESIIDCCAAPGGKTLYMASRLSGQGKVSAIDINKGRLRILKETAKLHQVDGVITTVHSDIRIFSEKNPVKHDKVLLDAPCSGLGVLSKRADLRWNRKLEDMEELKNLQDELLDAASVLVKGGGILVYSTCSIDPEENEQRVAAFLLRHPEFHIDPADGYVPHDFATEDGYYFSHPTRHSLDGAFGARLVRDHN 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 57730 68578 + Conep06aG0000700.1 Cone6ag0007 438891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0007 530 Pfam 16S rRNA methyltransferase RsmB/F 331 525 IPR049560 -
Cone6ag0007 530 SUPERFAMILY NusB-like 99 236 IPR035926 -
Cone6ag0007 530 MobiDBLite consensus disorder prediction 17 54 - -
Cone6ag0007 530 CDD AdoMet_MTases 340 465 - -
Cone6ag0007 530 Gene3D Vaccinia Virus protein VP39 326 530 IPR029063 -
Cone6ag0007 530 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 224 527 IPR029063 -
Cone6ag0007 530 FunFam Ribosomal RNA small subunit methyltransferase B 61 211 - -
Cone6ag0007 530 FunFam Ribosomal RNA small subunit methyltransferase B 324 528 - -
Cone6ag0007 530 Gene3D - 67 210 IPR035926 -
Cone6ag0007 530 PRINTS Viridiplantae FMU-related RCMT signature 93 109 IPR023268 -
Cone6ag0007 530 PRINTS Viridiplantae FMU-related RCMT signature 69 92 IPR023268 -
Cone6ag0007 530 PRINTS Viridiplantae FMU-related RCMT signature 209 222 IPR023268 -
Cone6ag0007 530 PRINTS Viridiplantae FMU-related RCMT signature 486 498 IPR023268 -
Cone6ag0007 530 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 112 528 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cone6ag0007 530 PRINTS RNA (C5-cytosine) methyltransferase signature 341 351 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cone6ag0007 530 PRINTS RNA (C5-cytosine) methyltransferase signature 510 527 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cone6ag0007 530 PRINTS RNA (C5-cytosine) methyltransferase signature 312 326 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cone6ag0007 530 PRINTS RNA (C5-cytosine) methyltransferase signature 459 475 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cone6ag0007 530 PRINTS RNA (C5-cytosine) methyltransferase signature 409 421 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cone6ag0007 530 Pfam NusB family 97 201 IPR006027 GO:0003723(InterPro)|GO:0006355(InterPro)
Cone6ag0007 530 FunFam 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 219 323 - -
Cone6ag0007 530 MobiDBLite consensus disorder prediction 21 37 - -
Cone6ag0007 530 Gene3D Sun protein; domain 3 219 325 - -
Cone6ag0007 530 NCBIfam 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 106 526 IPR004573 GO:0006364(InterPro)|GO:0008649(InterPro)
Cone6ag0007 530 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 252 528 IPR001678 GO:0008168(InterPro)
Cone6ag0007 530 Pfam Methyltr_RsmF/B-like, ferredoxin-like domain 232 302 IPR054728 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0007 K03500 - - mdm:103427068 820.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0226 Cone-Chr12:1175112 Cone6ag0007 Cone-Chr6:57730 4.98E-12 dispersed
Cone4ag0923 Cone-Chr4:7525522 Cone6ag0007 Cone-Chr6:57730 5.06E-22 dispersed
Cone6ag0007 Cone-Chr6:57730 Cone8ag0218 Cone-Chr8:1189571 4.45E-14 dispersed
Cone6ag0007 Cone-Chr6:57730 Cone7ag1227 Cone-Chr7:9105272 2.53E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g678 Blo03g00505 . Bda07g00413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0007 . . . . Csa07g00858 . . . . . . Bpe11g00590 . . Bma14g00679 . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01039 Cme01g01121
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016633 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6