Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0008 ATGTCGGATTCGGTAACATCTGAAAATGGATTGCCGGTAGATGTCCAACTACTTCGCGCGACCGACGATGAACATGGCGGAATCATTGTGGAAATGAACAAGGAGGAGGAGGCTATGGACCCTCACACCTTTCATACTTCGCTTACAGCTTCCCTCTCCCATTGGAAGCAGCAGGGCAAGAAGGGCGTCTGGATCAAGCTTCCAATTGAACTCGTACATCTCGTCGAAACTGCAGTAAAGGATGGATTTGGCTACCACCATGCTGAGCCAACTTACTTGATGCTCGTGCACTGGATTCCTGTAACTGGTAGCACTATTCCTGAAAATGCTTCACACAAAGTAGTTGTTGGTGGTGTTGTGTTGAGCAGCACAAATGAGATACTTGTTGTCCAGGAAAAAATTGGTAACTTGCGCGGAAAATGGAAAATCCCTACCGGCACTGTTGATGAGGGTGAGGACCTATTTGCGGCAGTTAAGAGAGAAGTGAAAGAAGAAACAGGAATTGACACAGAATTTCAGGAGATTGTTGCATTCAGACAGTTTCACAAGGCATTCTTTGAGAAGTCGACTCTGTTCTTCCTGTGCATGCTACGTCCGCTGTCCTTTGACATCCAGATTCAAGAACTGGAGATTGAGGCAGCCCAGTGGATGGCTTTTGAAGAATTTGCGGCGGAACCATACACCCAAAAGGACGAACCTTCAAAGTATATTGTGGAAATATGCTTAGCAAAGCGCTCGGAGGGGGGTTATTCTGGATATACTCCGGTGCCTGTTAAGTCTGTCTTCGACAACCGATCGAGTTTTTTATATTTAAACACTCATCATCTGAATAACTTCTCAGATTCTAATAAGTCTTAG 858 45.34 MSDSVTSENGLPVDVQLLRATDDEHGGIIVEMNKEEEAMDPHTFHTSLTASLSHWKQQGKKGVWIKLPIELVHLVETAVKDGFGYHHAEPTYLMLVHWIPVTGSTIPENASHKVVVGGVVLSSTNEILVVQEKIGNLRGKWKIPTGTVDEGEDLFAAVKREVKEETGIDTEFQEIVAFRQFHKAFFEKSTLFFLCMLRPLSFDIQIQELEIEAAQWMAFEEFAAEPYTQKDEPSKYIVEICLAKRSEGGYSGYTPVPVKSVFDNRSSFLYLNTHHLNNFSDSNKS 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 83567 86542 + Conep06aG0000800.1 Cone6ag0008 438892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0008 285 Gene3D - 15 103 - -
Cone6ag0008 285 FunFam Nudix hydrolase 8 113 248 - -
Cone6ag0008 285 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 127 144 IPR003293 -
Cone6ag0008 285 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 195 219 IPR003293 -
Cone6ag0008 285 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 109 127 IPR003293 -
Cone6ag0008 285 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 71 89 IPR003293 -
Cone6ag0008 285 FunFam nudix hydrolase 2 15 104 - -
Cone6ag0008 285 Pfam Nudix hydrolase domain 18 99 IPR040618 -
Cone6ag0008 285 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 113 245 - -
Cone6ag0008 285 SUPERFAMILY Nudix 82 238 IPR015797 -
Cone6ag0008 285 PANTHER NUDIX HYDROLASE RELATED 14 277 IPR003293 GO:0035529(PANTHER)|GO:0047631(PANTHER)|GO:0051287(PANTHER)
Cone6ag0008 285 ProSiteProfiles Nudix hydrolase domain profile. 111 239 IPR000086 -
Cone6ag0008 285 ProSitePatterns Nudix box signature. 146 167 IPR020084 GO:0016787(InterPro)
Cone6ag0008 285 Pfam NUDIX domain 112 231 IPR000086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0008 K26956 - - mdm:114819603 346.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1280 Cone-Chr3:31617979 Cone6ag0008 Cone-Chr6:83567 2.18E-91 dispersed
Cone6ag0008 Cone-Chr6:83567 Cone6ag0651 Cone-Chr6:3291079 1.55E-83 dispersed
Cone6ag0008 Cone-Chr6:83567 Cone5ag1799 Cone-Chr5:12751505 1.47E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g669 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005596 0 7 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 0 1 3 4 1 38