Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0009 ATGCCACCACTCCGGCCCCTGCTCCGCCCATTCTTCAACTCCGGCATTCTGGCCCTCATGGTCATTCTCTCTCTCCTGCCCTTCCGTCCCTTAACTCAAGCTCACAACGTAACCAAAATTCTAGCCCAACACCCTGACTTCTCCACCTTCAACCACTACTTGACCTTGACCCATCTCGCTCCCGAGATCAACCAGCGCACCACCATCACCGTCTGCGCCGTCCACAATGCCGCCATGAACCAACTCTTGTCCAAGCACCTCTCCATCTACTCCATCAAAAACATTCTCTCCCTCCATGTCCTCCTTGACTACTTTGGCGCCAAAAAGCTCCACCAGATAACTCATGGCACTGCCCTTGCCGCCACCATGTTCCAAGCTACAGGTTCTGCCCCCGGCTCTTCAGGCTTTGTCAACATCACAGACCTCAAGGGCGGTAAGGTAGGTTTCTCCCCTGAAGATAGCGGCGGCGGAAAAATCGATGCCTATTTCGTCAAATCCGTACATGAAATTCCCTACAACATCTCCGTCATTCAGATTAGCAAGATTCTACTGTCCGATGTGGCTGAAGCTCCGACTCCGGGTCCCAGCGAGCTTAATCTTACAGGCTTGATGTCAGCACTTGGATGCAAAGTATTTGCCGATACTCTCTCAGCTTCGGACGCTGAAAAGACGTTTGAGGACAGCGCTCAGGGCGGACTCACCGTCTTTTGCCCTCTCGATGACGTTTTCAAGGCATTTTTGCCCAAGTACAAAAACTTAACGGCCGCCGCCAAAAAGGCATTGCTGGAATACCACGGCGTGCCGGTGTATATGTCTATGTCTATGCTCCAATCAAATAACGGCATTATGAACACGTTGGCCACAGAAGGAGCCAAGAAGTTCGACTTTACCGTGCAGAACCAAGGTGAGGAGGTGACACTGAAAACCAAGATCGTGATGGCTAAAATCACCGGGACGCTTCTCGACAAGCAGCCGGTGGCTATCTACACGATCGACAAGGTCTTGAAGCCTCAAGAGTTGTTTAAGGGGGAAGCAGAGGCGCCAAAGGCTCAAAAAGATGCTTCGTCTCCCGATAGTGAGTCGCCGGAAAGTGATGTGGCGAATGAGACGGCAGATGATAATGGTGGAGCAGGACTGGGTGGGTGGAGAATTGGTTTAGCTGGTGTGTACGTGGGTGTTGTTGGGCTTGTGTTGTTGTGA 1200 51.92 MPPLRPLLRPFFNSGILALMVILSLLPFRPLTQAHNVTKILAQHPDFSTFNHYLTLTHLAPEINQRTTITVCAVHNAAMNQLLSKHLSIYSIKNILSLHVLLDYFGAKKLHQITHGTALAATMFQATGSAPGSSGFVNITDLKGGKVGFSPEDSGGGKIDAYFVKSVHEIPYNISVIQISKILLSDVAEAPTPGPSELNLTGLMSALGCKVFADTLSASDAEKTFEDSAQGGLTVFCPLDDVFKAFLPKYKNLTAAAKKALLEYHGVPVYMSMSMLQSNNGIMNTLATEGAKKFDFTVQNQGEEVTLKTKIVMAKITGTLLDKQPVAIYTIDKVLKPQELFKGEAEAPKAQKDASSPDSESPESDVANETADDNGGAGLGGWRIGLAGVYVGVVGLVLL 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 86745 87944 - Conep06aG0000900.1 Cone6ag0009 438893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0009 399 ProSiteProfiles FAS1/BIgH3 domain profile. 34 183 IPR000782 -
Cone6ag0009 399 SMART fasc_3 234 338 IPR000782 -
Cone6ag0009 399 SMART fasc_3 70 186 IPR000782 -
Cone6ag0009 399 FunFam Fasciclin-like arabinogalactan protein 10 189 338 - -
Cone6ag0009 399 MobiDBLite consensus disorder prediction 345 359 - -
Cone6ag0009 399 SUPERFAMILY FAS1 domain 193 338 IPR036378 -
Cone6ag0009 399 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 19 372 IPR033254 GO:0046658(PANTHER)|GO:0048364(PANTHER)|GO:0048367(PANTHER)
Cone6ag0009 399 Gene3D FAS1 domain 32 184 IPR036378 -
Cone6ag0009 399 Gene3D FAS1 domain 201 338 IPR036378 -
Cone6ag0009 399 ProSiteProfiles FAS1/BIgH3 domain profile. 196 335 IPR000782 -
Cone6ag0009 399 FunFam Fasciclin-like arabinogalactan protein 2 33 176 - -
Cone6ag0009 399 SUPERFAMILY FAS1 domain 40 184 IPR036378 -
Cone6ag0009 399 MobiDBLite consensus disorder prediction 345 374 - -
Cone6ag0009 399 Pfam Fasciclin domain 209 337 IPR000782 -
Cone6ag0009 399 Pfam Fasciclin domain 45 123 IPR000782 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0009 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0009 Cone-Chr6:86745 Cone8ag1365 Cone-Chr8:10905044 3.35E-153 dispersed
Cone14ag1220 Cone-Chr14:9917855 Cone6ag0009 Cone-Chr6:86745 2.06E-181 wgd
Cone15ag1241 Cone-Chr15:9801560 Cone6ag0009 Cone-Chr6:86745 7.08E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g668 . Blo03g01484 Bda07g00412 Bda09g00439 Bpe09g00126 Bpe08g01090 . Bma13g01116 . Cmo06g00685 Cma01g01075 Cma09g01013 Car01g00951 . Sed07g2749 Cpe06g00821 Cpe02g00823 Bhi09g01777 Tan01g3193 Cmetu01g1443 . . Mch11g1277 . Cla10g00408 Cam10g0405 Cec10g0427 Cco10g0417 Clacu10g0412 Cmu10g1244 Cre10g0661 Cone6ag0009 . Cone14ag1220 Cone15ag1241 Lsi02g01825 . . Cme06g02759 . . . Bda12g00965 Bpe11g00589 . Bma07g01245 Bma14g00680 . Cmo01g01120 Cmo09g01015 . . . . . . . . . . . . . Cla09g02079 Cam09g2166 Cec09g2231 . . . . Lsi05g00498 . Chy01g01144 Cme01g00903
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004217 4 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43