Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0013 ATGGCTGACGATGGAGTGACACGGCCCTTGCTGCCAGGATTCGATGTTCCTCCGAGAAGAAGATTTCGGCGTTGTAGAAGCGCTCCCCTTGCTGAGTCTCTTCCTGCAGAGACAAATGGCATCGGCCTGAATGTACGATCTGGATCCATGTTTGGGAACATGCACCCTAGTTTCAGAGTGGTAACCATCTATTTAACTGCCTACTTAGGTATGGGAACTGTGTGTTTCTACTTGGTTAGGCACCAGATAAAGGGGGAAAAGACAAATGAATTAATTGATGCTGTGTACTTTGTCATTGTTACGATGACAACTGTTGGATATGGAGATCTTGTGCCGAACAGTATCCTCACGAAGCTATTAGCTTGTGCTTTCGTCTTCACGGGGATGGCTTTAGGTGCCCTTGTACTTAGCAGAGCTGCTGACTATTTGGTCGAGAAGCAGGAGATATTGCTGGTTAAGGCCTTACATCAACATGATAAGGCCCAACCAATGGAGAGCATGAAAGAAATTGATACCAATAAAGAGAAAATCAAGTGCTTACTTGTCTCTTCCATTCTTCTGCTGCTTATAGTTTGCGGGACTCTTTTTCTAATATATGTTGAGGAATTGGATCCAGTTGATGCATTTTATTGTGTTTGTGCTACCATTACAACTCTAGGGTATGGAGATCAGAGCTTCTCAACAAGTGAAGGTCGTGTGTTTGCAATATTCTGGATTTTCACCAGCACCATTTGTTTGGCTCAAGTTTTACTCTATACTGCCGAACTAAACACGGTAACAAGGCAAAGGGCATTTGTGAAGTGGGTTCTGAATAGGAAGGTGACGAGCTTGGATCTGGAGGCAGCTGATCTGAATGATGATGGGGCTGTGGAGGTAGCTGAGTTTGTGATATACAAGCTGAAAGAGATGGGGAAGATTAGTCAGGATGACATCTATGTTTTGTTGAGAGAGTTTGAGAATCTTGATGTTGACCAGTCAGGGACGTTGTCGATAGCCGATATAACACTTGTGCAGTAG 1017 44.05 MADDGVTRPLLPGFDVPPRRRFRRCRSAPLAESLPAETNGIGLNVRSGSMFGNMHPSFRVVTIYLTAYLGMGTVCFYLVRHQIKGEKTNELIDAVYFVIVTMTTVGYGDLVPNSILTKLLACAFVFTGMALGALVLSRAADYLVEKQEILLVKALHQHDKAQPMESMKEIDTNKEKIKCLLVSSILLLLIVCGTLFLIYVEELDPVDAFYCVCATITTLGYGDQSFSTSEGRVFAIFWIFTSTICLAQVLLYTAELNTVTRQRAFVKWVLNRKVTSLDLEAADLNDDGAVEVAEFVIYKLKEMGKISQDDIYVLLREFENLDVDQSGTLSIADITLVQ 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 94055 96320 - Conep06aG0001300.1 Cone6ag0013 438897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0013 338 SUPERFAMILY EF-hand 279 335 IPR011992 -
Cone6ag0013 338 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 61 269 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Cone6ag0013 338 ProSitePatterns EF-hand calcium-binding domain. 283 295 IPR018247 -
Cone6ag0013 338 ProSitePatterns EF-hand calcium-binding domain. 322 334 IPR018247 -
Cone6ag0013 338 SUPERFAMILY Voltage-gated potassium channels 176 278 - -
Cone6ag0013 338 Pfam Ion channel 185 256 IPR013099 -
Cone6ag0013 338 Pfam Ion channel 64 144 IPR013099 -
Cone6ag0013 338 PRINTS Two pore domain K+ channel signature 100 128 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cone6ag0013 338 PRINTS Two pore domain K+ channel signature 217 226 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cone6ag0013 338 Gene3D - 54 149 - -
Cone6ag0013 338 Gene3D - 161 263 - -
Cone6ag0013 338 FunFam Calcium-activated outward-rectifying potassium channel 1 55 150 - -
Cone6ag0013 338 SUPERFAMILY Voltage-gated potassium channels 56 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0013 Cone-Chr6:94055 Cone9ag0915 Cone-Chr9:4502453 1.16E-48 dispersed
Cone6ag0013 Cone-Chr6:94055 Cone9ag0012 Cone-Chr9:59796 4.56E-208 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0013 K05389 - mdm:103422958 421.779