Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0017 ATGTCTGGAAATAGTTACTGTTTTGTGGAGTGGAAAGAGCAGTTTGTTTCGCAAGAGCGAGGTAATAGAGTAGTGCACTACTTTCTCAAGGATTCTGTTGGGGTTACCACTCTCGCCGTAGTTGGTACCGAGAGGAGTGTGAGGCACATGTTCTATGTTGTTTCTGATGAATTTTTGCAAGCCTATGGAAAGGAAAGTTCTGTCCCTAATGGTTTTAAATGGAGATCAAGGAGAGAGGTTGTGGATTGGCTTACATCTATGCTGTCAAAGCAGCATCTACACGGGGATCATTCAGAATCTCTGAAGTATGAGGCAACAAAAGCTCTAGGATCTCAACTTCTGAAGAATGGAGTAAGTTTCCTAGAGTCTGATGTACCTGAGGACAAGGTTCGTTCGGCAAGGAATTTCAGCGGACCTAGTACTGATATTGTTTGGTCTGGTGCCGCATGGACATGTGGTAAACAGCTCAAACACTACCCAGCATTTTGCAGAAATGGGACTTCCATTGCGATCCAATCTTTTGTTTTTGTCATGGCCAAGGGAGAGAATCACTACCTTGCTTACGTGGAAGATATGTACGAAGACAAGAAGGGTTTAAAAAAGGTTAAAGTGAGATGGTTTCACCACAACCAGGAGGTGAAGGGGATAATTACTCTACGCAATTCTCACCCAAAAGAAGTTTTCATCACACCATACGCACAGGTCATTAGTGCAGAATGTGTTGACGGTCCTGCTTCAGTCTTAACTCGAGAGCATTATGATAAATGCCTTGATGCTTTTCCTCACGCGTTGTTGTCCAGAGTTCATCTCTGCTATAGGCAGTTTAGAAGCAACCGACTGAAGCCTTTTGACTTGACTAGACTGCATGGTTACTTTGATCAGCCAATTCTCATCTCTTGTTTGGGTCTCAATGCTATCGCAAAACCTGAATCCACTTTTGATAGCTTGACTGGGGAAGAAGATGAAGATCCGGGCTCTGGTGACAATTTAAAGCTGGGAGTTAAGAGGATGAGAACTAGTAAAGGATCTCAAGTTTTTGAGCTAGAAAGGTCCCGAGGAAGTTCTGGTAAACGTCACCACATGGGGATGCATGAACCTTTCCAGAAATTAAACTGCAACTTGTTAGACAGGAAATGGCTTCCTCTCAAGCATGTTGAATGTTGGCCTAGGTCCTACCCGCTCTTTAAGGTGAACGAAAAAGTAGAGCTGCTTTGTCAAGATAGTGGCATCAGAGGTTGCTGGTTCAGGTGTACTGTCTTGCATTTATCACGGAAACAAATGAGAGTTCATTATGATGATTTACAAGATGAGGATGGATGTGGAAATCTTGAGGAATGGATCCCAACTTTTAAGATGGCTATGCCGGACAAACTTGGCATGAGACACTCTGGACGTCCAACCGTACGCCCAGCCCCCCCTCAAGAGCAAACAGACCATGCTCTTGAGATTGGGGCTGCAGTTGATGCATGGTGGAGTGATGGCTGGTGGGAAGGGATTCTTACCGGATGTGATGACTCTCAAAATGATAATATGCATGTTTATATTCCTGGTGAAAGCTTATTCTTGAATGTACACAAGAAGGACCTGAGAATATCTAGAGATTGGTTGGGGACCCAGTGGGTTGATATTGAGTCAAAGCGCAACATACTGTCATCAATATCTGCAGTTGTTGGGACAGACGCTAAGCTTTCCACCTCCTCAGCTTCTGCTCAGGATCCCAATTCTGGCAGTTTTGTTACATCGGAGGTTGGAGTAACCACTAGTAGTAAAAAACTTGATATTCTTGAAGAGTATAAAATTAACTCAACTGCATCAGCCAGTCCTGGCAAGCTTGCTAAAGATGTGGATGACGTCAACTGTAAGAGGCAACTGCCAATAGAAGAGAATGGAATTAAGGATGATGATGTAGACACAAAAAATAGTTGTGACAATATGGGTGATGTCCAAGATCATAACAATGATGTCAAAGCTGATGATGCTGATGATAAATTGTTAATGGAGGCATGTAGAGGTGTCAAACAGAAAGAAGCAGTGGCGTAA 2040 43.38 MSGNSYCFVEWKEQFVSQERGNRVVHYFLKDSVGVTTLAVVGTERSVRHMFYVVSDEFLQAYGKESSVPNGFKWRSRREVVDWLTSMLSKQHLHGDHSESLKYEATKALGSQLLKNGVSFLESDVPEDKVRSARNFSGPSTDIVWSGAAWTCGKQLKHYPAFCRNGTSIAIQSFVFVMAKGENHYLAYVEDMYEDKKGLKKVKVRWFHHNQEVKGIITLRNSHPKEVFITPYAQVISAECVDGPASVLTREHYDKCLDAFPHALLSRVHLCYRQFRSNRLKPFDLTRLHGYFDQPILISCLGLNAIAKPESTFDSLTGEEDEDPGSGDNLKLGVKRMRTSKGSQVFELERSRGSSGKRHHMGMHEPFQKLNCNLLDRKWLPLKHVECWPRSYPLFKVNEKVELLCQDSGIRGCWFRCTVLHLSRKQMRVHYDDLQDEDGCGNLEEWIPTFKMAMPDKLGMRHSGRPTVRPAPPQEQTDHALEIGAAVDAWWSDGWWEGILTGCDDSQNDNMHVYIPGESLFLNVHKKDLRISRDWLGTQWVDIESKRNILSSISAVVGTDAKLSTSSASAQDPNSGSFVTSEVGVTTSSKKLDILEEYKINSTASASPGKLAKDVDDVNCKRQLPIEENGIKDDDVDTKNSCDNMGDVQDHNNDVKADDADDKLLMEACRGVKQKEAVA 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 111705 115762 + Conep06aG0001700.1 Cone6ag0017 438901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0017 679 SMART agenet_At_2 393 458 IPR014002 -
Cone6ag0017 679 SMART agenet_At_2 479 537 IPR014002 -
Cone6ag0017 679 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 392 648 - -
Cone6ag0017 679 SMART BAH_4 167 286 IPR001025 GO:0003682(InterPro)
Cone6ag0017 679 Pfam BAH domain 172 257 IPR001025 GO:0003682(InterPro)
Cone6ag0017 679 Gene3D - 138 270 IPR043151 -
Cone6ag0017 679 ProSiteProfiles BAH domain profile. 167 286 IPR001025 GO:0003682(InterPro)
Cone6ag0017 679 CDD BAH_plant_1 162 291 - -
Cone6ag0017 679 MobiDBLite consensus disorder prediction 629 659 - -
Cone6ag0017 679 CDD Tudor_Agenet_AtDUF_rpt1_3 395 473 - -
Cone6ag0017 679 Pfam Agenet domain 399 473 IPR008395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0017 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0017 Cone-Chr6:111705 Cone9ag0466 Cone-Chr9:2217182 4.38E-76 dispersed
Cone5ag1811 Cone-Chr5:12810282 Cone6ag0017 Cone-Chr6:111705 2.20E-162 transposed
Cone6ag0017 Cone-Chr6:111705 Cone9ag0016 Cone-Chr9:91229 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g638 . . Bda07g00399 . . . . . . . Cma01g01084 . Car01g00960 Car09g00907 . . Cpe02g00814 . . . . . . . . . . . . . . Cone6ag0017 Cone9ag0016 . . . . . . . . . . Bpe11g00579 . . Bma14g00175 . Cmo01g01130 Cmo09g00997 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003848 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 1 2 1 43