Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0018 ATGGGTTTTCATTCTCTTTCTTGCCTTGTTATGCTTTGCTTCGCATTATCGGGTGGCATTCAGGTGGGGATCTCACAAAGTGGAGATTACACCAAGAATTATATAAGTTGGGAGGATTTGAGTGTGGAGGATAGTAGGGCGAGTTTGAATGGTGGAGATGAATACAATGGAAGCACAATAATCGTGGTTGATCAGAATGGAGGAGGAGATTCGGTTACCGTTCAAGGAGCAGTTGATATGGTTCCTCACTTTAATTCCCAAAGAGTCAAAATTTACATTCTTCCTGGACTTTACAGGCATTTTATGCTTTTGATTAAATCAATGAAATTTACAGCAATGATATTTCCGGCTTGTTCAAAAAATATATGCAGAGAGAAGGTACTCATACCAATTACAAAGCCATATATTTCATTCATAGGGAATAAGAAAAGGGCTTCTGACACTATAATTTCTTGGAACAATAAAGCTTCAGACAAAGACAGCAATGGATGGGAACTAGGAACATATAGATCAGCATCTGTGGCCATAGAATCCAATTACTTTTGCGCTTCTTGGATCACTTTCGAGAACACAGTAGGTGCAGTGCCTGGTGGGTATGGAATGCAAGCAGTGGCACTCAGAATTGCAGGGGATAAAGCAATGTTCTACCAAGTCAGAGTGTTGGGAGAACAGGACACACTTTTAGATGAGACTGGATCACATTACTTCCTCAAGTGTACTATCGAAGGCAGTGTTGATTTTATATTTGGAAAATCAAGGTCACTTTATCGGGGTTGTTTTATAAGGTCAAAAGCTGATAACTATGGAGCAATTGCAGCTCATCACAGAGATTCACCAGATGACAATTCCGGGTTCTCATTTGTCAATTGCATGATCAAGGGAACCGGGAAGATATTCTTGGGAAGAGCCTGGGGAAACTACTCAAGAACAATATATGCTTACTGTTATATTCAGGATATCATAACCCCTCCAGGTTGGAGTGACTGGAACTACCCATCCAGGCAAAGGACGGTGGAGTTTGGGGAATATAATTGCAGGGGAAAAGGCGCAGACACACAGGGTCGTGTTCCGTGGTCCAAGTCTTTCAGCTATGATGAAGTGAAGCCCTTTTTGGGTTTGAAGTTCATAGGTGGAGAGCAATGGCTTAGATTATAG 1155 41.47 MGFHSLSCLVMLCFALSGGIQVGISQSGDYTKNYISWEDLSVEDSRASLNGGDEYNGSTIIVVDQNGGGDSVTVQGAVDMVPHFNSQRVKIYILPGLYRHFMLLIKSMKFTAMIFPACSKNICREKVLIPITKPYISFIGNKKRASDTIISWNNKASDKDSNGWELGTYRSASVAIESNYFCASWITFENTVGAVPGGYGMQAVALRIAGDKAMFYQVRVLGEQDTLLDETGSHYFLKCTIEGSVDFIFGKSRSLYRGCFIRSKADNYGAIAAHHRDSPDDNSGFSFVNCMIKGTGKIFLGRAWGNYSRTIYAYCYIQDIITPPGWSDWNYPSRQRTVEFGEYNCRGKGADTQGRVPWSKSFSYDEVKPFLGLKFIGGEQWLRL 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 116009 117725 - Conep06aG0001800.1 Cone6ag0018 438902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0018 384 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 42 383 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cone6ag0018 384 Pfam Pectinesterase 121 378 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone6ag0018 384 FunFam Pectinesterase 111 384 - -
Cone6ag0018 384 SUPERFAMILY Pectin lyase-like 59 108 IPR011050 -
Cone6ag0018 384 Gene3D - 59 384 IPR012334 -
Cone6ag0018 384 SUPERFAMILY Pectin lyase-like 124 382 IPR011050 -
Cone6ag0018 384 ProSitePatterns Pectinesterase signature 2. 241 250 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0018 Cone-Chr6:116009 Cone8ag0400 Cone-Chr8:2461221 2.53E-91 dispersed
Cone6ag0018 Cone-Chr6:116009 Cone9ag0017 Cone-Chr9:94586 4.42E-256 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0018 K01051 - mdm:103418973 522.702