Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0019 ATGGCTACCTTAATATCCACCAACATACTTCCCTCTCTTACCCTCTGCAACTCTTCCACATTGCTTTCTTCGAAGCCACCCCAATTTTCTTCCTTCTCTTTCCATTCTGCCACTGCTCCTAAGCTCAAGGGTCTAAATCTGTCACTTGCTTCAACAACTAGGGTTTATGCTGCTTCTCAAGTGGTGGACTCCCCTGATGCCATAGAACCGCCCCCAGAAATCCTTGATGCCGCTGACTCCCTCGCACTTCAGGTTGAAGATTCAGAGACGCCCGAAACTTCCTCTCTGGGTATTAGTGAAGATCTGGACAAGATAATGGATGCTGCAAGGACCACCAATGCTAAGACGATGGGTCCGGTGCCTTTACCAACCAAAAAGCGCATATACTGTGCTCTCAAATCACCCCATGTGCATAAGGATGCTCGCTTCCATTTTGAAATCCGTACCCATCAGCGCCTCATCGATATTCTTTACCCCACTGCCCAAACAATTGATTCCTTGATGCAGCTTGACCTTCCTGCTGGGGTTGATGTCGAGGTCAAACTCTAA 549 48.09 MATLISTNILPSLTLCNSSTLLSSKPPQFSSFSFHSATAPKLKGLNLSLASTTRVYAASQVVDSPDAIEPPPEILDAADSLALQVEDSETPETSSLGISEDLDKIMDAARTTNAKTMGPVPLPTKKRIYCALKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 118873 120746 + Conep06aG0001900.1 Cone6ag0019 438903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0019 182 SUPERFAMILY Ribosomal protein S10 103 182 IPR036838 -
Cone6ag0019 182 PRINTS Ribosomal protein S10 family signature 120 135 IPR001848 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone6ag0019 182 PRINTS Ribosomal protein S10 family signature 141 155 IPR001848 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone6ag0019 182 Hamap Small ribosomal subunit protein uS10 [rpsJ]. 83 182 IPR001848 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone6ag0019 182 ProSitePatterns Ribosomal protein S10 signature. 109 124 IPR018268 GO:0003723(InterPro)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone6ag0019 182 Gene3D Ribosomal protein S10 domain 94 182 IPR036838 -
Cone6ag0019 182 Pfam Ribosomal protein S10p/S20e 103 181 IPR027486 -
Cone6ag0019 182 NCBIfam 30S ribosomal protein S10 100 181 IPR001848 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone6ag0019 182 SMART Ribosomal_S10_2 99 181 IPR027486 -
Cone6ag0019 182 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 101 182 IPR001848 GO:0003735(PANTHER)|GO:0003735(InterPro)|GO:0005739(PANTHER)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0015935(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0019 K02946 - - csv:101213702 221.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0019 Cone-Chr6:118873 Cone9ag0018 Cone-Chr9:97423 2.72E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g636 . . Bda07g00398 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0019 Cone9ag0018 . . . Csa07g01069 . . . . . . Bpe11g00577 . . Bma14g00695 . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01084 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006978 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37