Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0020 ATGGATCTTTGGCTCACGATTCAAACAGATGCTCTACTCGATGCTGAACAAGAACCAATCCTCTCCAGTTACTGTATCAACTTTGTCTTATCTCACAATTCAATGGAAAGCCCTCTAGTCAATCACCTTTCAACCAAACTGAGCAGTTCTAGTTTACCCTTTTGCACTCTCTATGATCTCTTCATGGAGGAGCTAAGAAAATATCCTGAAACCTTGAGGCTTGTGAAATTCTATTTGGTAGCTGCGAAAGAAAGAGACCCATCTTGCATAAGCTATGGTGGCGCACATAAATTGTGGTCAAACGGTTGGAAAGTCCTGGCCCTGTGGATCCAAAACAGGGTTTCTGAGGTATTAGCTGTAGACATTCATCCGGGGGCAAAAATAGGACGTGTGATATTGCTTGATCATGCGACCGGGGTGGTGATCAGGGAGATGGTAGTGATAGGGAATAATGTATCGATTTTGCATGATGTCACCTTAGGCGGAACTGGTAAGCATTCAGGTGATAGACACCCCAAGATTGACAATGGGGTGCTTATAGCGGGTACCTGTGTCTTAGGGAACATCAATATTGGTGATGGGGCTATGATTGGTTTCTTGGAAATCAAGCCCAAATAA 618 43.85 MDLWLTIQTDALLDAEQEPILSSYCINFVLSHNSMESPLVNHLSTKLSSSSLPFCTLYDLFMEELRKYPETLRLVKFYLVAAKERDPSCISYGGAHKLWSNGWKVLALWIQNRVSEVLAVDIHPGAKIGRVILLDHATGVVIREMVVIGNNVSILHDVTLGGTGKHSGDRHPKIDNGVLIAGTCVLGNINIGDGAMIGFLEIKPK 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 121496 122163 + Conep06aG0002000.1 Cone6ag0020 438904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0020 205 SUPERFAMILY Trimeric LpxA-like enzymes 4 198 IPR011004 -
Cone6ag0020 205 SMART SATase_N_2_a 3 93 IPR010493 GO:0005737(InterPro)|GO:0006535(InterPro)|GO:0009001(InterPro)
Cone6ag0020 205 PANTHER SERINE ACETYLTRANSFERASE 2 198 - GO:0005829(PANTHER)|GO:0009001(PANTHER)
Cone6ag0020 205 Gene3D serine acetyltransferase, domain 1 1 120 IPR042122 -
Cone6ag0020 205 CDD LbH_SAT 120 198 IPR045304 -
Cone6ag0020 205 Gene3D Hexapeptide repeat proteins 121 200 - -
Cone6ag0020 205 Pfam Serine acetyltransferase, N-terminal 3 92 IPR010493 GO:0005737(InterPro)|GO:0006535(InterPro)|GO:0009001(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0020 K00640 - - gmx:100779106 256.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0020 Cone-Chr6:121496 Cone7ag0732 Cone-Chr7:4430145 3.28E-54 dispersed
Cone14ag1210 Cone-Chr14:9857553 Cone6ag0020 Cone-Chr6:121496 2.36E-73 wgd
Cone15ag1229 Cone-Chr15:9748359 Cone6ag0020 Cone-Chr6:121496 2.44E-70 wgd
Cone6ag0020 Cone-Chr6:121496 Cone9ag0019 Cone-Chr9:99910 1.21E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1179 . . Bda04g00218 . . . . . . . . Cma07g00388 . Car07g00341 . Cpe19g00894 . . . . . . . . Cla01g02032 Cam01g2138 Cec04g1795 Cco04g1861 Clacu01g2154 Cmu01g2030 Cre04g1705 Cone6ag0020 Cone9ag0019 Cone14ag1210 Cone15ag1229 Lsi01g00537 . . Cme08g00989 Blo05g00679 . . . . Bpe06g00157 . . . . Cmo07g00382 . . . . . . Bhi10g02361 . . . . . . Cla02g00088 Cam02g0095 Cec02g0096 Cco02g0088 Clacu02g0092 Cmu02g0087 Cre02g0426 Lsi10g00685 Csa06g03394 Chy02g00512 Cme11g00099
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001381 4 9 3 1 3 1 3 2 2 1 1 1 2 3 2 3 1 6 3 2 2 2 1 2 2 2 2 3 3 1 73