Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0021 ATGTCAGTCCTCTTCTCCCATAACTCGTCATCCATGTACTCTGGTATCGAGTTTCTCATTCAGCCCACTTTCTTTCGTGCCTTTTCTGGTTCACTGCACTTGCTATTGTTGCTCGTTCTGTTTGGTTCTTGGCTGTTACAAAAATGCAAGCCGGGAGCTGGCCAGGGCCCAAAGGAAAGGTTTAAGAACACCAAAGTTTCTTACCGCAAGCAGGCTTTACTTTGCTGTCTGGCTGTTTCTCTATTCAATCTTGTATTTTGTTTGTTGAGCTATTTTTATTGGTATAGAAATGGTTGGTCTGAAGAAAACATGGGCACCCTTTTGGATTTAGCACTTAGAACTCTTGCTTGGGCTGCAGTTTCTCTTCATTTACACTCTGGATTCTCTGTTTCTAATGAATCAAAGTTTCCATTTTTATTGAGACTCTGGTGGGGTTTCTACTTCACCATTTCCTTCTACTCCCTTGTTATCAATTTTGTTCTTTATCGAAAACACCTATCCTTACCGACTCAAAACTTAGTTTCCGATGTTGTCTCCTTCATCACTGGCTTGTTTTTCCTATATGTGGGGTTTTGGGGGAAGAGACAGAGTGAAAACACCAATGTTGAAGAACCCCTTCTTAATGGTGACTCTAACACTAGTGTCAGCAATGAAATTGAATCAAAGAAGTTAAAAGGGGAAGAGACTGTGACCCCATTCTCAAATGCTGGAATTTTCAGCATGCTTACTTTCTCTTGGATGGGTCCTTTGATTGCTCTTGGCAATAAGAAGGCCTTAGACCTTGAGGATGTTCCTCAGCTTGCTAGCACTGATAGTGTTTTGGGGTCCTTTCCGCGCTTCAAATATAAGATAGAGGCAGAGTGTGGTGCAGTGAGCAAGGTCACCACACTTACTTTGGTGAATGCATTGTTCTACTCAGCTTGGAAAGACATCCTTTTGACTGCTCTTCTTGTCTTACTCTACATATTGTCCTCCTATGTTGGCCCCTATCTTATTGATACTCTAGTTCAATATCTCGCTGGTAGAAGGGAATATGAAAATGAGGGCTATGCTTTAGTCTCTACATTTTTTCTTGCAAAGCTTGTAGAGTGCTTTTCTCGGAGGCATTGGTTCTTCAGGTTGCAGCTGGTTGGTATTAGGATGCGGTCGGTGCTAATTACATTGATCTACAATAAGAGTTTGACCCTTTCCTGCCAGTCAAAGAAACAACACACTTCCGGGGAGATGATCAATTTCATGACCGTTGATGCTGAAAGGGTTGGTGATTTCAGTTGGTATCTGCATGATCCTATGATGGTTGTTCTACAAGTTGCTTTGGCCTTGGTCATTTTGTACAAAAACCTTGGTCTTGCTTCGATTGCAACTCTCGGTGCGACTATAATCGTTATGTTAGCGAATGTTCCCTTGGGAAAGTTGCAAGAGAAGTTTCAAGACAATATAATGAAATCTAAAGATACAAGGATGAAGGCTACATCGGAGATTTTGAGGAACATGAGGATTCTCAAGCTTCAAGGGTGGGAAATGAAATTTCTATCTAAGATTACAGTACTGAGGAAGATTGAGGAGGGATGGTTGAAAAAATATGTCTATACAATGGCCATGACGACATTTGTCTTTTGGGGCGCCCCAACTTTCGTATCAGTTGTCACTTTCGGTGCTTGTATGCTTATGGGAATCCCTCTTGAATCCGGAAAAATCTTATCTGCACTTGCAACTTTCAGGATTCTTCAAGAGCCAATTTATAACCTTCCAGACACGATCTCGGTGATAGTTCAAACCAAAGTCTCACTTGATAGAATTGCGTCATTCCTTCGTCACGATGACCTTAAACCAGATGTCATAGAGAAGCTTCCAGTAGGTAGTTCTGACACAACAATTGAGGTCGTTCATGGAAATTTCTCTTGGGATTCATCTTTCCCAACTCCGACACTGCAAGATATTGATTTCAAAATTCATCATGGCATGCGAGTTGCTATTTGTGGTACTGTTGGCTCTGGCAAATCGAGCTTGCTCTCCTCTATCCTAGGAGAAGTACCTAAGATATCTGGGGCCCTTAAGGTCTGTGGGACCAAGGCCTATGTTGCTCAGTCACCATGGATACAGAGTGGCAAGATTGAGGACAACATATTGTTTGGTAAAGAGATGGACAGAGAAAGGTACGAGAGGGTTCTCGAAGCATGTGCCCTGAAGAAGGACCTTGAAGTTCTTTCATTTGGTGATCAGACAGTAATCGGGGAGAGAGGAATCAACCTGAGCGGTGGACAGAAACAAAGAATACAGATAGCTCGTGCGCTTTACCAGGATGCCGATATCTACTTGTTTGATGATCCTTTTAGTGCAGTCGATGCTCATACAGGATCTCACCTCTTTAAGGAATGTCTTTTTGGCCTTTTGGGCTCAAAAACAGTGATTTATGTTACTCATCAAGTGGAATATTTACCAGCGGCTGACCTTATCTTGGAAGCCTTGTCAGCACTTGATTCCATAGAGGATGCACCTCCATCTGATAAGTCTTCTATCAGCAAGGAAAATGGATTTACCCTCGGTACTAATGGTGTGGTGCAAGAGGGAGAAAGCAAAGATATTCAAGATGGTAAAGCAGATCCCGGAAAGGCAAACAAGCAGCTTGTTCAAGAAGAAGAGAGAGAGAAAGGCAGAGTTGGGTTGTCAGTCTACTGGCAGTATCTCACAGTCGCTTATGGAGGAGCTCTAGTGCCCTTTTTTTTGCTTTCCCAGATTCTATTTCAATTGCTTCAAATTGGAAGCAACTACTGGATGACATGGGCAACTCCCATTTCGGAAGATGTGAAGCCTCCTGTTGGAGGGTCTACCCTTATTATCGTCTATGTTGCTTTGGCAGTTGGAAGTTCCTTCTGCATCCTTTCAAGAACAATGCTTCTTGTAACAGCTGGCTATAAGACGGGTACTCTACTCTTCAATAGAATGCACATGTGTATTTTCCGATCACCCATGTCGTTCTTTGATGCCACTCCAAGTGGACGGATACTGAACAGAGCTTCTACGGACCAAAGTGCAGTTGATATGAACATACCATTTCAATTTGGAGCTCTTGCCTTCTCACTCATCCAGCTCTTGGGGATTATTGCAGTAATGTTTCAGGTTGCATGGCAGGTTTTCATTGTTTTTATCCCTGTGATTGCAGCCAGTATCTGGTATCAGCAATATTACATTCCTTCAGCAAGAGAGCTCTCACGTTTAGTAGGAGTATGCAAAGCTCCGGTGATTCAACATTTTTCCGAAACCATTTCTGGATCAACAACTATCAGGGGCTTTGATCAAGAATCAAGATTCAGGGAAACAAATATGAAGCTGATGGATGGCTACTCTCGGCCAAAGTTCAATATTGCTGCTGCAATGGAATGGCTCTGCTTCCGCTTGGATTTGCTTTCTTTCATTACCTTTGTGTTTTCTTTGATTTTCCTCATCTCTATCCCTACAGGGGTTATTGATCCTGGCATTGCTGGCTTAGCTGTGACATACGGACTTACCCTGAACAGGTTACAAACTTGGTTTATATGGAACCTCTGCAATACAGAGAACAAAATTATATCTGTGGAGAGGATACTTCAGTATACTTCGATCCCTAGTGAGCCACCGCTGATCATAGAGGAAAACCGACCAGATCCTACTTGGCCTTCATCAGGAGAAGTTGAAATTCATGATCTACAGGTTCGTTATGCCCCACATATGCCGCTTGTATTGCGAGGTATCACATGTACTTTTGAGGGAGGAAAGAAAGCCGGAATTGTAGGAAGAACTGGGAGCGGTAAATCAACTCTCATACAAACACTTTTCCGAATAGTTGATCCTGTTGCTGGTCAGATCATCATAGATAACACCAACATCTCTTCCATCGGACTGCATGATTTGCGGTCTAGACTGAGCATTATCCCTCAAGATCCAACCATGTTTGAAGGGACAGTACGAAGCAATCTGGACCCACTTGAAGAGTACACAGATGAACAAATCTGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAGTCAGGAAGAAAGAAGGGAAGCTCGACTCAACTGTTACCGAGAATGGAGAGAATTGGAGTATGGGTCAGAGGCAGCTGGTATGCCTCGGTAGAGTGCTGCTCAGAAAAAGTAAGATCGTAGTGCTTGATGAAGCCACCGCATCAGTCGACACTGCTACAGATAATCTGATTCAGCAGACACTACGACATCATTTTTCCGACAGTACCGTCATTGTAATTGCACATAGGATAACTTCTGTGGTTGATAGTGACATGGTTCTACTTCTAAACAATGGGCTGATTGAGGAGTATGATGCTCCCACAAGATTACTAGAAAACAAGTCCTCGGCTTTTGCTCAGCTTGTAGCAGAGTACACTGTTAGGTCTAATTCCAGTTTTTGA 4407 42.93 MSVLFSHNSSSMYSGIEFLIQPTFFRAFSGSLHLLLLLVLFGSWLLQKCKPGAGQGPKERFKNTKVSYRKQALLCCLAVSLFNLVFCLLSYFYWYRNGWSEENMGTLLDLALRTLAWAAVSLHLHSGFSVSNESKFPFLLRLWWGFYFTISFYSLVINFVLYRKHLSLPTQNLVSDVVSFITGLFFLYVGFWGKRQSENTNVEEPLLNGDSNTSVSNEIESKKLKGEETVTPFSNAGIFSMLTFSWMGPLIALGNKKALDLEDVPQLASTDSVLGSFPRFKYKIEAECGAVSKVTTLTLVNALFYSAWKDILLTALLVLLYILSSYVGPYLIDTLVQYLAGRREYENEGYALVSTFFLAKLVECFSRRHWFFRLQLVGIRMRSVLITLIYNKSLTLSCQSKKQHTSGEMINFMTVDAERVGDFSWYLHDPMMVVLQVALALVILYKNLGLASIATLGATIIVMLANVPLGKLQEKFQDNIMKSKDTRMKATSEILRNMRILKLQGWEMKFLSKITVLRKIEEGWLKKYVYTMAMTTFVFWGAPTFVSVVTFGACMLMGIPLESGKILSALATFRILQEPIYNLPDTISVIVQTKVSLDRIASFLRHDDLKPDVIEKLPVGSSDTTIEVVHGNFSWDSSFPTPTLQDIDFKIHHGMRVAICGTVGSGKSSLLSSILGEVPKISGALKVCGTKAYVAQSPWIQSGKIEDNILFGKEMDRERYERVLEACALKKDLEVLSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLFGLLGSKTVIYVTHQVEYLPAADLILEALSALDSIEDAPPSDKSSISKENGFTLGTNGVVQEGESKDIQDGKADPGKANKQLVQEEEREKGRVGLSVYWQYLTVAYGGALVPFFLLSQILFQLLQIGSNYWMTWATPISEDVKPPVGGSTLIIVYVALAVGSSFCILSRTMLLVTAGYKTGTLLFNRMHMCIFRSPMSFFDATPSGRILNRASTDQSAVDMNIPFQFGALAFSLIQLLGIIAVMFQVAWQVFIVFIPVIAASIWYQQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRGFDQESRFRETNMKLMDGYSRPKFNIAAAMEWLCFRLDLLSFITFVFSLIFLISIPTGVIDPGIAGLAVTYGLTLNRLQTWFIWNLCNTENKIISVERILQYTSIPSEPPLIIEENRPDPTWPSSGEVEIHDLQVRYAPHMPLVLRGITCTFEGGKKAGIVGRTGSGKSTLIQTLFRIVDPVAGQIIIDNTNISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSTVTENGENWSMGQRQLVCLGRVLLRKSKIVVLDEATASVDTATDNLIQQTLRHHFSDSTVIVIAHRITSVVDSDMVLLLNNGLIEEYDAPTRLLENKSSAFAQLVAEYTVRSNSSF 1468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 138565 144771 + Conep06aG0002100.1 Cone6ag0021 438905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0021 1468 Gene3D - 612 840 IPR027417 -
Cone6ag0021 1468 MobiDBLite consensus disorder prediction 834 852 - -
Cone6ag0021 1468 Gene3D - 1207 1460 IPR027417 -
Cone6ag0021 1468 Pfam ABC transporter transmembrane region 910 1149 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone6ag0021 1468 Pfam ABC transporter transmembrane region 311 579 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone6ag0021 1468 MobiDBLite consensus disorder prediction 859 879 - -
Cone6ag0021 1468 CDD ABC_6TM_ABCC_D1 321 600 IPR044746 GO:0140359(InterPro)
Cone6ag0021 1468 Pfam ABC transporter 644 778 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone6ag0021 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 820 IPR027417 -
Cone6ag0021 1468 FunFam ABC transporter C family member 5 869 1205 - -
Cone6ag0021 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1224 1458 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone6ag0021 1468 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 220 1459 IPR050173 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cone6ag0021 1468 FunFam ABC transporter C family member 3 1207 1459 - -
Cone6ag0021 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 849 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone6ag0021 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 909 1187 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone6ag0021 1468 SUPERFAMILY ABC transporter transmembrane region 907 1206 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone6ag0021 1468 CDD ABC_6TM_ABCC_D2 905 1199 IPR044726 GO:0140359(InterPro)
Cone6ag0021 1468 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone6ag0021 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 312 592 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone6ag0021 1468 MobiDBLite consensus disorder prediction 857 879 - -
Cone6ag0021 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1215 1456 IPR027417 -
Cone6ag0021 1468 SMART AAA_5 653 836 IPR003593 GO:0016887(InterPro)
Cone6ag0021 1468 SMART AAA_5 1250 1435 IPR003593 GO:0016887(InterPro)
Cone6ag0021 1468 FunFam ABC transporter C family member 5 611 825 - -
Cone6ag0021 1468 FunFam ABC transporter C family member 10 295 608 - -
Cone6ag0021 1468 Pfam ABC transporter 1241 1389 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone6ag0021 1468 CDD ABCC_MRP_domain1 626 820 - -
Cone6ag0021 1468 Gene3D ABC transporter type 1, transmembrane domain 869 1205 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone6ag0021 1468 Gene3D ABC transporter type 1, transmembrane domain 290 608 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone6ag0021 1468 MobiDBLite consensus disorder prediction 833 852 - -
Cone6ag0021 1468 SUPERFAMILY ABC transporter transmembrane region 305 611 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone6ag0021 1468 CDD ABCC_MRP_domain2 1222 1442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0021 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0455 Cone-Chr4:2026540 Cone6ag0021 Cone-Chr6:138565 1.22E-133 dispersed
Cone6ag0021 Cone-Chr6:138565 Cone7ag0442 Cone-Chr7:1994760 0 dispersed
Cone6ag0021 Cone-Chr6:138565 Cone9ag0020 Cone-Chr9:104129 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g626 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0021 Cone9ag0020 . . Lsi02g01854 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002483 1 1 1 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 1 1 3 2 2 3 2 1 3 6 6 59