Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0022 ATGGCTTCCTTGGAAGAAGAAACCAAATCCATAAGCACCCTTAATCTTCATGAAGAAGATGATGGTAATGAAGAAGAGAACTTCTCATATGCGATGCAATTCGCGAGTTTATCAGTGGCTCCCATGACACTTCAAGCAGCAATCGAGCTAGGCATCTTTGAAATTATAGCCAAAGCTGGTCAAGACGCAAAGCTCTCACCTGCTCAGATTGCTGCTCAGCTGTCCACTGTGAATCCTGAGGCTTCTCTGATGCTTGACCGCATGTTGAGACTTCTGGTCAGCCACTCGCTCCTTGCTTGCTCTCTGGTGGATGATGGTCATGCTAAAGATTCTCAGAGACTGTATAGCTTAACACCAGTCTCCAAATACTTTCTTAGGAACGATGATGGTGTTTCACTGGGTCCCCTTTTAGCCTTGATTCAGGACAAGGTCTTTTTGGAAAGCTGGCGCGAGCTGAAAGGTGCGGTTCTTGCAGGAGGAGTTCCATTTGACAGGGTCCACGGAAAAAATGCCTTTGAATACCCAGGCTTTGACCCGAGGTTTAATCAAGTTTTCAACATGGCAATGCTCAATCACACAACCATTGTATTGAAAAGAATCCTCAAGTCCTACAAGGGATTTGAAAACCTCAAACAGGTGGTTGATGTAGGTGGTGGACTAGGAGTGACCCTCAACTTAATCACATCCTACCACCCTTCCATTAAGGGCATTAACTATGACTTGCCTCATGTTATTCAACATGCCCCACCATATCCCGGTGTGGAACATGTAGGGGGAGATATGTTTGCGAGTGTACCAACAGGAGATGCCATTTTTATGAAATGGATTCTTCATGATTGGAGTGATGATCACTGCTTGAAGCTGTTGAAGAACTGCTACACTGCGATTCCAGATGATGGGAAGGTAATAGTTGTGGAGCTGATTGTACCAATCATGCCGGAGAGCAGTGCAGCTGTTAAAGCCACCTCTGGAATTGACGTTCTTATGATGACTCAAAATCCGGGAGGAAAGGAGCGGACACGACAGGAATTCATAGGCTTGGCAACTGGAGCTGGTTTTAGTGGTGTCAGATTTCAATGTTTTGTCTGCAATTTCTGGGTTATGGAGTTCTTTAAATAG 1119 45.13 MASLEEETKSISTLNLHEEDDGNEEENFSYAMQFASLSVAPMTLQAAIELGIFEIIAKAGQDAKLSPAQIAAQLSTVNPEASLMLDRMLRLLVSHSLLACSLVDDGHAKDSQRLYSLTPVSKYFLRNDDGVSLGPLLALIQDKVFLESWRELKGAVLAGGVPFDRVHGKNAFEYPGFDPRFNQVFNMAMLNHTTIVLKRILKSYKGFENLKQVVDVGGGLGVTLNLITSYHPSIKGINYDLPHVIQHAPPYPGVEHVGGDMFASVPTGDAIFMKWILHDWSDDHCLKLLKNCYTAIPDDGKVIVVELIVPIMPESSAAVKATSGIDVLMMTQNPGGKERTRQEFIGLATGAGFSGVRFQCFVCNFWVMEFFK 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 150563 152103 + Conep06aG0002200.1 Cone6ag0022 438906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0022 372 SUPERFAMILY Winged helix DNA-binding domain 23 127 IPR036390 -
Cone6ag0022 372 PIRSF O-mtase 8 372 IPR016461 GO:0008168(InterPro)
Cone6ag0022 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 372 IPR016461 GO:0008168(InterPro)
Cone6ag0022 372 FunFam Caffeic acid O-methyltransferase 125 372 - -
Cone6ag0022 372 FunFam Caffeic acid 3-O-methyltransferase 10 124 - -
Cone6ag0022 372 PANTHER O-METHYLTRANSFERASE 29 356 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
Cone6ag0022 372 Gene3D Vaccinia Virus protein VP39 125 372 IPR029063 -
Cone6ag0022 372 MobiDBLite consensus disorder prediction 1 22 - -
Cone6ag0022 372 Pfam Dimerisation domain 42 93 IPR012967 GO:0046983(InterPro)
Cone6ag0022 372 Pfam O-methyltransferase domain 149 354 IPR001077 GO:0008171(InterPro)
Cone6ag0022 372 Gene3D - 9 124 IPR036388 -
Cone6ag0022 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 370 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0470 Cone-Chr14:2258367 Cone6ag0022 Cone-Chr6:150563 2.95E-88 dispersed
Cone14ag0471 Cone-Chr14:2262022 Cone6ag0022 Cone-Chr6:150563 1.85E-168 dispersed
Cone14ag0472 Cone-Chr14:2265233 Cone6ag0022 Cone-Chr6:150563 2.54E-50 dispersed
Cone15ag0752 Cone-Chr15:4409949 Cone6ag0022 Cone-Chr6:150563 5.91E-98 dispersed
Cone15ag0753 Cone-Chr15:4419315 Cone6ag0022 Cone-Chr6:150563 1.72E-130 dispersed
Cone1ag1025 Cone-Chr1:55137199 Cone6ag0022 Cone-Chr6:150563 6.06E-146 dispersed
Cone5ag0732 Cone-Chr5:3154646 Cone6ag0022 Cone-Chr6:150563 6.45E-148 dispersed
Cone6ag0022 Cone-Chr6:150563 Cone8ag1495 Cone-Chr8:11359495 2.58E-64 dispersed
Cone9ag0022 Cone-Chr9:111215 Cone6ag0022 Cone-Chr6:150563 1.81E-126 transposed
Cone6ag0022 Cone-Chr6:150563 Cone9ag0021 Cone-Chr9:110359 4.46E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0022 K13066 - mdm:103421923 530.02