Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0023 ATGGCACTTGAGTCTTCCATTCTGGGCCTGCCCTCATTCAATCCAGGCGCGAAATCTTTTTCTCTTTTGCATTGCAATCGGCATATGCCTCTGCCTGCGAAATTCTTGCCGAGACTTTACGGGTACCCAATTCGTCCTTCATCCAATTGCATTCATTGTCACATTTCTGGAAGCTTTTTGAGCTCGAGACATGAAAGAAATCGCTTTTTGGAAAATAGAGCTTGTTTGAGACGTGTAGTTAGTAACGCTGAGATTCTGTGTGAGCAGAATGCTGGTTCAGATTCGCGTTTTGAGTTCATTCGAGAATTGGTAAAGAGTGGGATACTAGTGGCTGCAGTTGTTTGTGTGGTTATGGTGTTTGGGTGTAGAAGAGTTTTTGCAGTAGAAAGTGGTGTCAATGCCGGTTATGGGGTATCTGGGCAGAGCATCGTGGCGCTTAGGAATGCGTGGCCCAAGGTATTGCAGGTCCTTTGCGTTTTCAAGGAGCAGGGTTTGATTTTGGCTGCGCTTTTAGGTCTCTCGGCATTTTTCTCCATGGCTGAGACTTCAATTACAACCCTTTGGCCTTGGAAGGTTCGTGAGTTAGCAGAAAAAGAGTCCGAAGAAGGTGTCTTCAGAATGCTTAGCGGTGATATTACACGATTTCTCACAACTATACTTATTGGCACAACTGTGGTAAATATAGGAGCGACTGCACTAGTAACAGAAGCTTCAACAGCAATATTTGGGGAAGCTGGTGTTAGTGCAGCGACTGGAGTAATGACTGTTGCTATTTTGCTCCTTACTGAACTGACTCCGAAAAGTATAGCCGTGCATAATGCAACCGAGGTTGCGAGATTTGTGGTTAGGCCAGTTGCTTGGCTTTCCGTGATATTGTACCCTGTTGGAAGAATTGTCACATATATATCAATGGGGATGCTCAAAATTCTTGGCTTGAAAGGGATAAGTGAACCATATGTGACAGAGGAGGAGTTGAAGTTGATTCTGCGAGGTGCTGAGTTAAGTGGGGCTATAGAGGAAGAAGAACAGGATATGATCGAGAATGTGTTAGAGATAAAAGATACCCATGTTAGGGAGGTGATGACACCTCTTGTTGATGTAGTGGCAATAGATGCTAGTGCGACACTTGTAGACTTTCACAGCTTGTGGTTAACCCATCAATATTCAAGAGTACCTGTTTTTGAGCAGCGTGTTGATAATATCGTTGGTATTGCGTATGCAATGGATTTACTGGATTTTGTTCAAAAGGGTGAATTATTAGAAAGCACACCTGTGGGGGATATGGCTCATAAACCTGCTTACTTTGTGCCTGATTCAATGTCAGTCTGGAATCTTCTTAGAGAGTTTCGCATCCGGAAGGTACACATGGCTGTTGTGCTCAATGAATATGGTGGCACTGTTGGATTAGTGACCCTGGAAGACGTTGTGGAGGAAATTGTAGGTGAAATATTTGATGAAAATGATTCGAAGGAGGAAATCCAGAAGAAAACTGGCTACATTGTTATGCGTGCAGATGGAGTCTATGATGTGGATGCAAACACATCAATTGATCAGCTTTCTGAAGATCTTAACATGAAAATGCCAGAGGGTCATCAGTATGAGACCGTGTCGGGATTTATCTGCGAGGCTTTTGGATACATCCCAAGGACTGGAGAGAGCATTAAAGTAGTTCTTGAGAAGGAAAATGAAGAAGAGAATGATGGGGCCAACTCTGATAACCAGAATCAGAAGGAAAAACATCTGGTTTTTAGACTGGAGATACTAGCTGGAAATGCTAGAAAGGTCAGTGCTGTTCGAATTGAAAAGGTAAATGATGAGGCAATGTTGGAGAGCAAAGAAGTGGCACGCTTGGTTCCCAAAATCATGAAGAGGAAATGGAGCAGTGATGATGACTTGGATGCTGCAGAAAGTGATGATGATTCATTGTCAAAGAAACCACCTAATGACATTGCTAGTGAGCATCTAGATGATAATGAGTGCAGTACTAGCAATTACTTATAA 2001 43.03 MALESSILGLPSFNPGAKSFSLLHCNRHMPLPAKFLPRLYGYPIRPSSNCIHCHISGSFLSSRHERNRFLENRACLRRVVSNAEILCEQNAGSDSRFEFIRELVKSGILVAAVVCVVMVFGCRRVFAVESGVNAGYGVSGQSIVALRNAWPKVLQVLCVFKEQGLILAALLGLSAFFSMAETSITTLWPWKVRELAEKESEEGVFRMLSGDITRFLTTILIGTTVVNIGATALVTEASTAIFGEAGVSAATGVMTVAILLLTELTPKSIAVHNATEVARFVVRPVAWLSVILYPVGRIVTYISMGMLKILGLKGISEPYVTEEELKLILRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASATLVDFHSLWLTHQYSRVPVFEQRVDNIVGIAYAMDLLDFVQKGELLESTPVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGLVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRADGVYDVDANTSIDQLSEDLNMKMPEGHQYETVSGFICEAFGYIPRTGESIKVVLEKENEEENDGANSDNQNQKEKHLVFRLEILAGNARKVSAVRIEKVNDEAMLESKEVARLVPKIMKRKWSSDDDLDAAESDDDSLSKKPPNDIASEHLDDNECSTSNYL 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 152638 157793 + Conep06aG0002300.1 Cone6ag0023 438907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0023 666 SMART cbs_1 366 415 IPR000644 -
Cone6ag0023 666 SMART cbs_1 432 480 IPR000644 -
Cone6ag0023 666 SUPERFAMILY CBS-domain pair 344 483 IPR046342 -
Cone6ag0023 666 FunFam Magnesium/cobalt efflux protein CorC 338 488 - -
Cone6ag0023 666 ProSiteProfiles CNNM transmembrane domain profile. 156 342 IPR002550 -
Cone6ag0023 666 SMART CorC_HlyC_2 501 604 IPR005170 -
Cone6ag0023 666 ProSiteProfiles CBS domain profile. 428 486 IPR000644 -
Cone6ag0023 666 MobiDBLite consensus disorder prediction 626 666 - -
Cone6ag0023 666 MobiDBLite consensus disorder prediction 638 656 - -
Cone6ag0023 666 Pfam Transporter associated domain 503 603 IPR005170 -
Cone6ag0023 666 SUPERFAMILY FAD-binding/transporter-associated domain-like 499 606 IPR036318 GO:0050660(InterPro)
Cone6ag0023 666 PANTHER HEMOLYSIN-RELATED 131 631 - -
Cone6ag0023 666 Pfam Cyclin M transmembrane N-terminal domain 165 342 IPR002550 -
Cone6ag0023 666 CDD CBS_pair_CorC_HlyC_assoc 356 477 IPR044751 -
Cone6ag0023 666 Coils Coil 559 579 - -
Cone6ag0023 666 Pfam CBS domain 357 414 IPR000644 -
Cone6ag0023 666 Pfam CBS domain 425 480 IPR000644 -
Cone6ag0023 666 ProSiteProfiles CBS domain profile. 361 422 IPR000644 -
Cone6ag0023 666 Gene3D - 336 487 IPR046342 -
Cone6ag0023 666 Gene3D - 488 604 IPR016169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0023 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0023 Cone-Chr6:152638 Cone9ag0023 Cone-Chr9:112991 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g623 . . Bda07g00396 . . . . . . . Cma01g01088 . Car01g00964 . . . . . . . . . . . . . . . . . . Cone6ag0023 Cone9ag0023 . . . . . . . . . . Bpe11g00574 . . Bma14g00305 . Cmo01g01134 . . . . . . . . . . . . . . Cla09g02052 Cam09g2140 Cec09g2207 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005841 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 2 1 1 2 1 1 38