Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0026 ATGTCTGTTTTCTCTCCCTACTGCCATACTCCCATCCTTCACTCTTTCTCTTCTACTTGTGCTTCTTCGAAGATATTACATCAGTCTCAATTCGCATTAGGTTCTACCTTTCTTTCCTATTTCTATGGGAGTGGAGTTGTCAAGAGGAACAGTTCCTGTCATTTCGTTGTGCTTTCCACGCACTCCAACCCTAAAATTCTCAAGTCCAACCGCAAGTCTAGGTCCGGTAAGGTCTTATCCTCGTTTGACAGCGATGAAGATGACGAGGAGGAAGAGGAGGAGGATCTCGACGACGAAGATGATTGTTGGGATAAGGATGAATTTGCAGAACCTGCAGAATTCGATGCTAAAAGAAAGAGGTCCAACTCAAATAAGGAGGTTGGCAGCAGCTACGAACAGCAAGGGAACAAGAGGCATCCAACCAAAAGCCAGGATACAAGATCCTTGAACTCTGGACAAAGCCTTAACACTGATGAAGACTATTTTGATGTCCAAGATGCTAGAAATGCATCATTTAAAGAAACCTACAAGTCTAACAAGGAGGAAGGAAGTTACTTGGGCATAAGTGGCAGAGCAAAGATGACCAAGAAATCAATGGCAGTGAGATTTCCCCGTCTAGCTGAAGAAATAGATGTGGATGAGAAATGGTTCCCTCTTCTTGATTATCTCACGACATTTGGGCTTAAGGAATCACAGTTTATCCAGATGTATGAGAGGCACATGCCTTCCCTTCAAATAAATGTCTGTTCTGCACAGGAGAGGCTTGAATACTTGTTAAGTGTTGGGGTCAAACAGAGAGATATCAGAAAAATACTTTTGAGGCAGCCTCAGATTCTTGAGTATACGGTGGAGAACAATTTGAAGTCTCATGTTGCTTTCTTGCTGAGTTTGGGTATCACAAATTCCAGGATAGGACAGATAATTGCTGCTTCACCATCCCTTTTCTCATATAGTGTTGAGAATTCACTAAAACCCACTGTAAGGTACTTGGTGGAGGAGGTTGGAATTAAGGAGAAAGATTTAGGCAAAGTTGTGCAGCTAAGTCCACAAATCCTGGTTCAGCGGATTGACATATCATGGAATACTAGATATATGTTTCTGTCAAAGGAATTGGGAGCTCCAAGAGATAGTATAGTAAAGATGGTAAAAAAGCATCCCCAACTTCTTCATTATAGCATCGATGATGGGTTACTACCTAGGATCAATTTTCTAAGGAGTATTGGAATGCATAATGCTGACATCTTGAAAGTTTTGACAAGCCTGACCCAGGTATTATCTTTATCCTTGGAACAAAATTTAAAGCCCAAGTATATATATTTGGTTGATGAGCTGCATAATGAGGTCCAATCATTGACCAAGTATCCTATGTACCTAAGCTTGTCTTTAGACCAAAGAATCCGTCCTCGACACAGGTTCCTGGTTGCTCTAAAGAAAGCTCCCAAGGGGCCATTTCCTCTAAGTTCACTGGTTCCAACCGATGAATGCTTTTGTCAGCAGTGGGCTGGAACTAGCTTAGATAATTATTTGGCATTTCGGCAGAGATTATTATTAAAGGAGTTTGCAAAGAAATACAAAAGGAAATGA 1584 41.29 MSVFSPYCHTPILHSFSSTCASSKILHQSQFALGSTFLSYFYGSGVVKRNSSCHFVVLSTHSNPKILKSNRKSRSGKVLSSFDSDEDDEEEEEEDLDDEDDCWDKDEFAEPAEFDAKRKRSNSNKEVGSSYEQQGNKRHPTKSQDTRSLNSGQSLNTDEDYFDVQDARNASFKETYKSNKEEGSYLGISGRAKMTKKSMAVRFPRLAEEIDVDEKWFPLLDYLTTFGLKESQFIQMYERHMPSLQINVCSAQERLEYLLSVGVKQRDIRKILLRQPQILEYTVENNLKSHVAFLLSLGITNSRIGQIIAASPSLFSYSVENSLKPTVRYLVEEVGIKEKDLGKVVQLSPQILVQRIDISWNTRYMFLSKELGAPRDSIVKMVKKHPQLLHYSIDDGLLPRINFLRSIGMHNADILKVLTSLTQVLSLSLEQNLKPKYIYLVDELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVALKKAPKGPFPLSSLVPTDECFCQQWAGTSLDNYLAFRQRLLLKEFAKKYKRK 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 169433 171609 - Conep06aG0002600.1 Cone6ag0026 438910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0026 527 PANTHER CGI-12 PROTEIN-RELATED 185 499 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)|GO:0032502(PANTHER)
Cone6ag0026 527 MobiDBLite consensus disorder prediction 77 161 - -
Cone6ag0026 527 MobiDBLite consensus disorder prediction 83 108 - -
Cone6ag0026 527 SMART mt_12 269 300 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone6ag0026 527 SMART mt_12 342 374 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone6ag0026 527 SMART mt_12 305 337 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone6ag0026 527 SMART mt_12 448 480 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone6ag0026 527 SMART mt_12 379 410 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone6ag0026 527 SMART mt_12 415 447 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone6ag0026 527 FunFam Transcription termination factor MTERF9, chloroplastic 280 515 - -
Cone6ag0026 527 Pfam mTERF 185 476 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone6ag0026 527 Gene3D Transcription termination factor 3, mitochondrial 278 515 IPR038538 -
Cone6ag0026 527 MobiDBLite consensus disorder prediction 145 160 - -
Cone6ag0026 527 MobiDBLite consensus disorder prediction 109 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0026 K15031 - - csv:101207692 663.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0026 Cone-Chr6:169433 Cone9ag0025 Cone-Chr9:125158 5.51E-227 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g617 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0026 Cone9ag0025 . . . . . . . . . . . . Bma07g01269 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g00946
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002407 4 3 3 3 1 1 2 1 2 2 1 1 2 2 2 1 1 4 2 2 1 1 0 2 2 1 2 5 2 2 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46253 PF00338 Ribosomal_S10 2.30E-31 No_clan Cone TR