Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0027 ATGGACCCCTCCCTCTACAACTCCGACTCCTGCTTTAGCAGGAGCTCCGACGGCCCACCACCCAGCAATCCCGGTCGTCCTGAATTACCAACAGCTACCTCTGAAGCTGGTCAAGTAGGAGGCGCCAAGTACAAGTTGATGTCGCCGGCCAAGCTCCCGATCTCTAGGTCCCCTTGCATCACGATCCCTCCCGGGCTTAGCCCGACGTCGTTTTTGGAGTCCCCGGTTATGCTCTCCAACATGGCAGAACCTTCTCCAACTACTGGGTCCTTAACTAAGCCTCAGATACATCGGCCTTCTAATACATCTACCTTCCCTATAGCCACCAGAGTTTTCTCTGCTAACAATACTGATGATGATGGTAGATCTGATTTCTTCGAGTTCAAACCACATGCTAGAGCAAATATGGTTTTTGCAGATATGAATCCTAGAGAGAGTGATGAGCTGAAACGAGTCCAGGGACATCACGGGCAGCCTAAATCATTTGCCATCTCATCCTCAGCTATAAGTGAGATGGCCGTTTTTCCAGATGATTTGTGTCTATCTTCTCCCAAGCAGATGGCAATTTCTGGGGCTAGTGCTTCTGTTAAAGTAGATTCGGTTGAATTTAATCCGAGAGGGCCAATGAATGTAATAAGTGGTGGGATTTCTGTAGTGGCTGAAAAGTCGTCTGATGATGGATATAACTGGCGAAAATATGGACAGAAACTTGTTAAGGGAAGTGAATTCCCACGCAGCTATTACAAGTGTACCCATCCTCACTGTGAAGTTAAAAAACTGTTTGAACGTTCTCATGATGGACAAATAACAGAGATTATATACAAGGGTACTCATGATCATCCTAAACCTCAACTCAATAGGCGATGTAGTGGCGGTGCCATGACTTCTATCCAGGAGGAGAAATCTGACAAGCCTCTGTATTTGAATTGCCAAGATGACAAGTCAGCTGCCAGATATGGTCAAATTTCTCAAGCCATGGAGTCAAATGGTACTCATGATCCAGCCCCAGTTACATTGAAAGATGATAGTGTAGAACGTACGGGTTCGTTGCTAAATAAGGGTAATGATGATGTTGATGATGACGATCCATTCTCAAAGCGGAGGAAAATGGACGTTGGTGGGTTCGACGTTACTCCATTGGTTAAGCCCATTAGGGAACCTCGTGTTGTTGTGCAAACCCTAAGTGAGGTTGATATATTGGATGATGGGTACCGCTGGCGCAAATACGGCCAGAAAGTAGTAAGAGGAAATCCCAATCCAAGGAGTTATTACAAGTGCACAAATGCCGGATGCCCTGTTAGAAAACATGTAGAAAGGGCATGCCATGATCCGAAAGCTGTCATTACGACATATGAAGGAAAACATAATCATGATGTCCCCACTGCAAAATCTAGCAGCCATGACGCACCGGGCCCGATGACAATGGGGGGACCATCAAGGTTCAGATCAGACGAAAATGAGGATGTGAGTCTTGATCTCGGGGTAGGTATTAACGTGGCTGCTGAGAATAGATCCAATGGCTACAGCCAAAACCAAAATAGCCGGTCAAACTTTAAGGCAGTTGAAGGTACTCCGGCATCGACACATTTTGGGGTTGTAAATAGAGGAGGCGTAGACCAGTTTGGATTGAGAGAAAATATGAGTGATGGCCGGAGCATTGAGATTGCACCGATAAACCATTCTTCTTACCAATACTCACCGAACATGGGAAGAATACTAACAGGCCCATAG 1731 46.04 MDPSLYNSDSCFSRSSDGPPPSNPGRPELPTATSEAGQVGGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVMLSNMAEPSPTTGSLTKPQIHRPSNTSTFPIATRVFSANNTDDDGRSDFFEFKPHARANMVFADMNPRESDELKRVQGHHGQPKSFAISSSAISEMAVFPDDLCLSSPKQMAISGASASVKVDSVEFNPRGPMNVISGGISVVAEKSSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPHCEVKKLFERSHDGQITEIIYKGTHDHPKPQLNRRCSGGAMTSIQEEKSDKPLYLNCQDDKSAARYGQISQAMESNGTHDPAPVTLKDDSVERTGSLLNKGNDDVDDDDPFSKRRKMDVGGFDVTPLVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERACHDPKAVITTYEGKHNHDVPTAKSSSHDAPGPMTMGGPSRFRSDENEDVSLDLGVGINVAAENRSNGYSQNQNSRSNFKAVEGTPASTHFGVVNRGGVDQFGLRENMSDGRSIEIAPINHSSYQYSPNMGRILTGP 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 172101 175961 - Conep06aG0002700.1 Cone6ag0027 438911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0027 576 Gene3D WRKY domain 385 461 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0027 576 Gene3D WRKY domain 216 284 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0027 576 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 153 486 IPR044810 GO:0003700(InterPro)
Cone6ag0027 576 MobiDBLite consensus disorder prediction 79 103 - -
Cone6ag0027 576 FunFam WRKY transcription factor 33 387 453 - -
Cone6ag0027 576 ProSiteProfiles WRKY domain profile. 219 283 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0027 576 MobiDBLite consensus disorder prediction 1 19 - -
Cone6ag0027 576 Pfam WRKY DNA -binding domain 401 458 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0027 576 Pfam WRKY DNA -binding domain 225 281 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0027 576 SUPERFAMILY WRKY DNA-binding domain 221 283 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0027 576 ProSiteProfiles WRKY domain profile. 395 460 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0027 576 SMART WRKY_cls 400 459 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0027 576 SMART WRKY_cls 224 282 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0027 576 FunFam WRKY transcription factor 216 284 - -
Cone6ag0027 576 SUPERFAMILY WRKY DNA-binding domain 392 460 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0027 576 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1330 Cone-Chr12:10026135 Cone6ag0027 Cone-Chr6:172101 4.01E-74 dispersed
Cone2ag0536 Cone-Chr2:2960579 Cone6ag0027 Cone-Chr6:172101 2.24E-75 dispersed
Cone4ag0520 Cone-Chr4:2323337 Cone6ag0027 Cone-Chr6:172101 4.45E-75 dispersed
Cone6ag0027 Cone-Chr6:172101 Cone7ag0070 Cone-Chr7:297307 1.55E-84 dispersed
Cone14ag1206 Cone-Chr14:9812542 Cone6ag0027 Cone-Chr6:172101 4.25E-148 wgd
Cone15ag1223 Cone-Chr15:9724224 Cone6ag0027 Cone-Chr6:172101 5.65E-34 wgd
Cone6ag0027 Cone-Chr6:172101 Cone9ag0026 Cone-Chr9:128238 1.65E-274 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46254 PF06426 SATase_N 3.00E-16 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0027 - - - 0.0