Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0029 ATGTCGTCCGACGACCTTGAATCCTCCGCTGATAAGGACTCTGAACCATTTGTGGAGATCGATCCAACCGGAAGGTATGGACGCTACGATGAGCTTCTCGGATCAGGGGCTGTGAAGAAAGTGTACCGTGCATTTGATCAAGAAGAAGGAATAGAAGTAGCATGGAACCAAGTCAAACTGAGAAACTTCAGCAACGATCCGACCATGATTGACCGTCTTTATTCCGAGGTCAGGTTGCTAAGGACCTTAACCAACACCAACATAATCGCCTTGCACAACGTTTGGCGTAATGAAGAACGCAACACCCTGAATTTCATCACAGAAGTTTGCACGAGCGGGAATTTGAGGGAGTACAGGAAAAAACACAAGCATGTTTCAATGAAAGCCTTGAAAAAATGGTGTAAACAAATATTGAAAGGATTAGACTATTTGCATACGCATGAGCCTTGTGTTATTCATAGAGATCTCAATTGCAGCAATATTTTTGTCAATGGCAACATAGGACAGGTTAAGATTGGTGATTTGGGATTGGCAGCCATTGTAGGGAAGAGTCATTCAGCGCATTCTATCTTAGGGACGCCTGAATATATGGCACCAGAGCTTTACGAAGAAGATTACACGGAAATGGTGGACATATATTCGTTCGGGATGTGTTTGCTTGAGATGGTGACTCTGGAAATTCCTTATAGTGAATGTGATAATGTGGCCAAGATATATAAAAAAGTGTCGGCCAGGGTGAGGCCACAGGCGTTTAATAAGGTCGGGGATTCTGAAGTGAAGGATTTCATCGAGAAGTGTCTTGCTGAACCCAGATCACGGCCCTCTGCTGCGCAGCTTCTCCAGGACACCTTTTTTGATGAAGTTGATGATGATGAAGATGATGATAACAATGATGATGATGATGATGATAATGATGATTTGTTTGCTAATGAGGCCTGA 939 43.34 MSSDDLESSADKDSEPFVEIDPTGRYGRYDELLGSGAVKKVYRAFDQEEGIEVAWNQVKLRNFSNDPTMIDRLYSEVRLLRTLTNTNIIALHNVWRNEERNTLNFITEVCTSGNLREYRKKHKHVSMKALKKWCKQILKGLDYLHTHEPCVIHRDLNCSNIFVNGNIGQVKIGDLGLAAIVGKSHSAHSILGTPEYMAPELYEEDYTEMVDIYSFGMCLLEMVTLEIPYSECDNVAKIYKKVSARVRPQAFNKVGDSEVKDFIEKCLAEPRSRPSAAQLLQDTFFDEVDDDEDDDNNDDDDDDNDDLFANEA 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 182398 184090 + Conep06aG0002900.1 Cone6ag0029 438913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0029 312 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0029 312 MobiDBLite consensus disorder prediction 1 19 - -
Cone6ag0029 312 CDD STKc_WNK 25 285 - -
Cone6ag0029 312 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Cone6ag0029 312 MobiDBLite consensus disorder prediction 284 312 - -
Cone6ag0029 312 FunFam probable serine/threonine-protein kinase WNK9 110 291 - -
Cone6ag0029 312 Gene3D Transferase(Phosphotransferase) domain 1 110 291 - -
Cone6ag0029 312 MobiDBLite consensus disorder prediction 282 312 - -
Cone6ag0029 312 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 287 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cone6ag0029 312 SUPERFAMILY Protein kinase-like (PK-like) 29 291 IPR011009 -
Cone6ag0029 312 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0029 312 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Cone6ag0029 312 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1295 Cone-Chr3:31818478 Cone6ag0029 Cone-Chr6:182398 1.98E-164 dispersed
Cone6ag0029 Cone-Chr6:182398 Cone7ag0248 Cone-Chr7:1045463 5.88E-118 dispersed
Cone14ag1205 Cone-Chr14:9809900 Cone6ag0029 Cone-Chr6:182398 4.22E-148 wgd
Cone15ag1222 Cone-Chr15:9719898 Cone6ag0029 Cone-Chr6:182398 7.29E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82900 PF00664 ABC_membrane 8.80E-21 CL0241 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0029 K08867 - mdm:103448336 494.967