Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0031 ATGGCATCAAACCAGAATCTCAGAGATCTTCAATGGATTCTTCAAGCTATCGAATCTGAAGACCTCAACCTTCAAAACCTGTCCTTTAACCTGTCTCAACCCACTTCTGGCTGTCACCGAGAAACAGAAAACTCCATGAACATATACATTTCCCAGAACAATCTTCCACATTTTTCCAGCATACTCACAGTTTTAGCAAATTCAGAAAACAACCTAAATTCCCTGACAAACATGGAGTTCCATCATGCCGATTGGGAATTACAACAAATAAAACATCTTGGTCTGCTTCTTGGTAGTGACCACAATATCAAGCAACTCGTGTTTCGAAGAAACAGATTTAGTAAGGAATGTTTATCTGAATTATGTAATGTTCTGAAGACAAACACTGTCATAAAAGAGCTTATGTTTTTGGAATCAGCCATTGGATCATTCGGAGCTTGGGTTCTTGCTTCTGTTCTCAAGGCTAATGACACCTTGGAGGAGTTTCAAATATGGGAAGACTCCATTGGGTCAAAGGGAGCAGAGGAACTATCAAACATGATTGAAGCTAACTCAACTCTAAAGCTGTTGACAATATTCGACTCAAATTCAATCACAGCAACTCCACTTATTTCTTCTGTCTTAGCAAGGAACAGGCTCATGGAAGTTCATGTTTGGAGTGCAGAGAATGGGGAAAGAAGCTCCAAGGTTGTTGAGTTTCTACCTGAGAACAGCACCCTTAGGATTTATCGGATCGACGAAATTGGCTCTTGCCGTATTGCTTGTGCTCTCGGATGGAACTCAACTGTCAAGTCGCTTGACTTGACTGGAGTCCGGTTAAAATCAAGGTGGGCTAAGGAATTTCGATCGGTTTTGGAACAGAATCAGAGCCTTAAAGAGGTAAATTTATCGAAAACTTGTTTAAAAGACAAGGGAGTAGTGTACATTGCAGCTGGACTTTTCAAAAACCAGCATTTGGAAACCTTGTTTCTTCATGGAAACCAGTATAGTGATGTGGGAGTTGAACACTTACTATGTCCTTTGAGCCGGTTCTCTGCTCTGCAATTCCAAGCAAATATCAGTCTCACCTCTTTAACATTTGGAGGAGGAAGAACCAAGATAGGAAGAGAAGGGCTTGCAGCCATTTTAAAGATGCTGACGACAAATCAAAGTGTGATTCGGTTAGGGATATATGATGATCAGAGTTTGAGACCCAATGATTATGTTAGAATCTTCAAGAGTTTGGAAAAGAATGCTACGTTGAGAAACTTGTCGCTTCAAGGTTGCAAAGGTGTTGAAGGAGAGTTGGTTTTGCAGACAATATTGGAGATATTACAGATAAATCCTTGGATTGAAGATATCGATCTTTCAAGAACACCTCTGCATAATTCCGGAAAGACTGATCAGATTTATCAAAGACTCGGACAGAATGGGAGGACTTTACCCGAGATCGATTTGCTCAAGGACATGCCTTTAACTGAGCCGAGGAGTTGTCGTGTTTTCTTCTGTGGGCAAGAATATGCAGGCAAAACCACTCTGTGTAATTCCATATCACAGAATTTCTCTTCTTCAAAGCTTCCCTATGTGGACCAAGTTAGGTCCTTAGTAATCCCAGTTGAACAAGCTGTTAGAACAGCAGGAATGAGAATCAAAACCTTAAAATATGAAGAAACAAAGATTTCGATATGGAATTTTGCCGGTCAGCATGAATTCTATTCCGTCCAGGATATCATGTTTCCAGGGCACGGAAGTGCATCGTTTTTCTTCATCATATCCAGCTTCTTCAGAAAACCGAACAACAGAGAACCAAAGAGTCCGGAAGAGATAGAAGAAGACCTACAATATTGGCTCAGGTTCATAGTTTCCAACTCAAAAAAAGCAGCTCATCGATGCATGCTACCAAATGTGACTATAGTCCTCACACAGTACGACAAAATCAATCATCCATCTGAGAATCTTCACCTCACTGTAAATTCTATTCAGAGATTGAGAGACAGGTTCCAAGGATTTGTTGATTTTTACCCTACTGTATTTACAGTTGATGCAAGATCATCAGCATCAGTCAATAAACTAGCACATCACATACGATCAACAAGCAAGACAATTCTGCAAAGAGTCCCTCGGGTTTATCAGCTCTGTAATGATCTCATACAAATCCTAACAGACTGGCGAAACGAGAACTACAACAAGCCAGCAATGAAATGGAAGCAATTTGAAGATCTATGCCAAGTTAAGGTTCCGGCCCTAAGAATTCGATCTAGACATGATAGTAAAGATAAGATTGGAACAAGGAGGCGGGCCATGGCTACTTGTCTTCATGATATAGGTGAGTTAATTTATTTTGATGAGCTCGGGCTCTTGATATTAGACTGTGAGTGGTTTTATGGTGAAGTGCTTGGCCAACTAATAAAGCTAGATGTCAAAAAGCAAAGTTTGATGGACAAAAATGGATTTATCATGAGGAAAGAGTTGGAGAAGATTTTAAGAGGGAGCTTACAGAGTCTTATTCCAGGAATGGGTTCAAAGGTTTTTGAAAACCTGGATGCAAATGATCTTGTAAAAATGATGCTCAAACTGGAACTGTGCTATGAACAAGATCAGTCTGATCCAAATTCTCCGCTTCTGATCCCATCAATTCTCGAAGAAGGAAGAGGAAAGCCACAGAGGTGGCAGTTAAGCTCATCTGACTACTGCCTCTATGCAGGCCGACATCTCGAGTGTGATGATTCGAGCCACATGTTTCTAACTCCCGGCTTCTTTCCTCGACTACAGGTGAATCTGCATAACAGAATTATGAAACTGAAGAATCAACATGGAGCGACTTACAGTCTCGAGAAGTACCTCATCACGATAAGTCTCAATGGAGTTTATATAAGAATAGAGCTAGGAGGGCAGTTGGGCTACTACATTGATGTTCTAGTATGTTCCACCCACAACCTTACAGAGACTCTTAGACCCATCCAGCAGATAATAATCCCGGCAATCCATAGCCTCTGTCATGGTGTCACCTTGACTGAAAATGTTATCAGGCCAGAATGTGTAAAAAATCTCACACCCCCTAGATATAGAAAAACCCAATTTGTATCATTACAGAAACTTAAACATGCATTGCTGTCTGTCCCTGCCGACAGCATGTATGATTATCAGCACACGTGGGGTCCGGTTTTGGAATCTGGCAGACAGATTCTAACAGCCGGTTTTGATTTTGCTCGGGACCTCCTATCAGATGATGATTTCCGGGAAGTATTACATAGGAGATACCATGACCTTTACAACCTTGCCGTTGAACTGCAAGTTCCAACAGAAAACAATGGAGAAACCTCGTCATCCACGATTGAAGATGACAGAATCGAACCAAGTTTTGATGGAATTGCAAAGGGGGTAGAGGTTATTTTGCAGAGACTAAAGATCATTGAACAAGAGATCAGAGATTTGAAGCAGGAGATCCAAGGACTGAGATATTATGAGCATAGACTACTCATTGAGCTTCACCGAAAAGTGAGCTACCTAGTAAACTACAATGTCCAGATTGAAGAGAGGAAAGTACCCAACATGTTCTATTTTGTTAGAACTGAAAACTACTCGAGGAGGCTGGTCACAAACATGATATCTGGTATGAATGCCCTACGAATGCACATGTTATGCGAATATCGGAGGGAAATACATGTTGTTGAAGATCAGATGGGATGTGAACTGATGCAGATAGATAACATGGCTGTCAAGTGTCTGGCTCCATATATGACTAAGTTCATGAAACTTGTAACATTTGCTCTCAAGATAGGGGCTCATTTAGCAGCTGGGATGGGAGAAATGATACCTGATTTGAGCCGTGCTGTAGCTCATCTGGCTGATTCTTCGGTGCTTAGCGGGGCAGCTGGGGCAGTTGCTGTGGGGGCAGTAGGGGCAGCGGCAATGGGACGGAGCCGAGCAGGAGAAAGTTCAAGGGATATCCAGCAAGATCAAAGAAGAGCTCAGCAATGGGTTGTGGATTTCTTGAGAGAGAGGAGGTGCTCTAGTGGAAGAGAGATTGCAGACATGTTTGGATTATGGAGAGTGAGATACAGGGAAGACGGCTACATTGCATGGATCTGTAGGAGACATATGACTCTCAGAGCACATGAAATCATTGAAGTTCCCATTTGA 4122 41.78 MASNQNLRDLQWILQAIESEDLNLQNLSFNLSQPTSGCHRETENSMNIYISQNNLPHFSSILTVLANSENNLNSLTNMEFHHADWELQQIKHLGLLLGSDHNIKQLVFRRNRFSKECLSELCNVLKTNTVIKELMFLESAIGSFGAWVLASVLKANDTLEEFQIWEDSIGSKGAEELSNMIEANSTLKLLTIFDSNSITATPLISSVLARNRLMEVHVWSAENGERSSKVVEFLPENSTLRIYRIDEIGSCRIACALGWNSTVKSLDLTGVRLKSRWAKEFRSVLEQNQSLKEVNLSKTCLKDKGVVYIAAGLFKNQHLETLFLHGNQYSDVGVEHLLCPLSRFSALQFQANISLTSLTFGGGRTKIGREGLAAILKMLTTNQSVIRLGIYDDQSLRPNDYVRIFKSLEKNATLRNLSLQGCKGVEGELVLQTILEILQINPWIEDIDLSRTPLHNSGKTDQIYQRLGQNGRTLPEIDLLKDMPLTEPRSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYVDQVRSLVIPVEQAVRTAGMRIKTLKYEETKISIWNFAGQHEFYSVQDIMFPGHGSASFFFIISSFFRKPNNREPKSPEEIEEDLQYWLRFIVSNSKKAAHRCMLPNVTIVLTQYDKINHPSENLHLTVNSIQRLRDRFQGFVDFYPTVFTVDARSSASVNKLAHHIRSTSKTILQRVPRVYQLCNDLIQILTDWRNENYNKPAMKWKQFEDLCQVKVPALRIRSRHDSKDKIGTRRRAMATCLHDIGELIYFDELGLLILDCEWFYGEVLGQLIKLDVKKQSLMDKNGFIMRKELEKILRGSLQSLIPGMGSKVFENLDANDLVKMMLKLELCYEQDQSDPNSPLLIPSILEEGRGKPQRWQLSSSDYCLYAGRHLECDDSSHMFLTPGFFPRLQVNLHNRIMKLKNQHGATYSLEKYLITISLNGVYIRIELGGQLGYYIDVLVCSTHNLTETLRPIQQIIIPAIHSLCHGVTLTENVIRPECVKNLTPPRYRKTQFVSLQKLKHALLSVPADSMYDYQHTWGPVLESGRQILTAGFDFARDLLSDDDFREVLHRRYHDLYNLAVELQVPTENNGETSSSTIEDDRIEPSFDGIAKGVEVILQRLKIIEQEIRDLKQEIQGLRYYEHRLLIELHRKVSYLVNYNVQIEERKVPNMFYFVRTENYSRRLVTNMISGMNALRMHMLCEYRREIHVVEDQMGCELMQIDNMAVKCLAPYMTKFMKLVTFALKIGAHLAAGMGEMIPDLSRAVAHLADSSVLSGAAGAVAVGAVGAAAMGRSRAGESSRDIQQDQRRAQQWVVDFLRERRCSSGREIADMFGLWRVRYREDGYIAWICRRHMTLRAHEIIEVPI 1373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 191380 195691 + Conep06aG0003100.1 Cone6ag0031 438915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0031 1373 Coils Coil 1121 1148 - -
Cone6ag0031 1373 Gene3D - 490 694 IPR027417 -
Cone6ag0031 1373 PANTHER PROTEIN TORNADO 1 1 1373 - -
Cone6ag0031 1373 SUPERFAMILY RNI-like 90 217 - -
Cone6ag0031 1373 SMART LRR_RI_2 288 315 - -
Cone6ag0031 1373 SMART LRR_RI_2 411 436 - -
Cone6ag0031 1373 SMART LRR_RI_2 316 343 - -
Cone6ag0031 1373 SMART LRR_RI_2 156 183 - -
Cone6ag0031 1373 SUPERFAMILY RNI-like 245 477 - -
Cone6ag0031 1373 Pfam C-terminal of Roc, COR, domain 758 925 IPR032171 -
Cone6ag0031 1373 Gene3D Ribonuclease Inhibitor 235 346 IPR032675 -
Cone6ag0031 1373 Gene3D Ribonuclease Inhibitor 1 217 IPR032675 -
Cone6ag0031 1373 Gene3D Ribonuclease Inhibitor 347 476 IPR032675 -
Cone6ag0031 1373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 689 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0031 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0031 Cone-Chr9:147216 Cone6ag0031 Cone-Chr6:191380 2.02E-104 transposed
Cone9ag0032 Cone-Chr9:148242 Cone6ag0031 Cone-Chr6:191380 2.06E-45 transposed
Cone9ag0033 Cone-Chr9:148635 Cone6ag0031 Cone-Chr6:191380 5.32E-104 transposed
Cone6ag0031 Cone-Chr6:191380 Cone9ag0030 Cone-Chr9:146632 2.64E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g607 . . Bda07g00394 . . . . . . . . . Car01g00970 Car09g00896 Sed07g2724 Cpe06g00796 Cpe02g00804 Bhi09g01727 Tan01g3153 Cmetu01g0554 . Hepe01g1229 Mch11g1238 . . . . . . . . Cone6ag0031 Cone9ag0031 . . Lsi02g01858 Csa07g00975 . . . . . . Bpe11g00572 . . Bma14g00307 . Cmo01g01142 Cmo09g00987 . . . . . . . . . . . . . Cla09g02047 Cam09g2135 Cec09g2201 . . . . . . Chy01g01082 Cme01g00963
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006977 1 1 2 1 1 1 2 1 1 2 1 1 0 1 1 2 1 3 2 1 1 1 1 1 1 2 1 1 1 1 37