Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0037 ATGGGGATGTTGTCTACAGTGACGAACTTAGGGGGAGACCATGAATTGGTGATTCCTATCACCTTGTTCGTCGCGGTTCTGTGTCTCTGCTTAGTCATTGGCCACTTGCTCGAGGAAAATCGTTGGATCAACGAGTCCATTACTGCCATTCTCATCGTTCTCCACCAGGATGAAACTCCTTTGCTATACAGCCTTGTCTTTGGAGAAGGAGTCGTAAATGATGCCACTTCAGTTGTCCTCTTCAATGCTATTCAGAAGATTGATGTCACTCAGCTTAATTGCCTCACAATCCTTCGCGTTATTAGAGACTTTTGTTATCTTTTCTTCACGAGCACTTGTCTTGGAGTCGCTAGTATCCATTTGGATGCTGTCGACATTGAGAAGTGGAAGATGACCAATTTAAGTTTTGGGGAATCGGTGGGTATCTATAGTACCATTATCTTCTTAATATTGCTGGCCCGTGCAGCTTTTGTGTTTCCGCTCTCTGCTTTGTCCAATTTCTTTAATAGACATATTGAGAGCCAACATCTGATCACATTTAAGCATCAGATAGTGATTTGGTGGGCTGGGCTTATGAGAGAAGCTGTCTCCATTGCTTTGGCTTTCAAACAGTTCACATATTCTGGTGTTACTATGGATCCAATTAATGCTACAATGGTTACCAACACCATCATTGTTGTTCTCTTCAGCACAGTGGTAAGTGATTTACTTGGCATATTTTCGAACACATGTTCCCTACTACCAATTCGATCTTGTTTTTTTATTTTTTTTCTTTTTTTTTTTTAA 786 40.84 MGMLSTVTNLGGDHELVIPITLFVAVLCLCLVIGHLLEENRWINESITAILIVLHQDETPLLYSLVFGEGVVNDATSVVLFNAIQKIDVTQLNCLTILRVIRDFCYLFFTSTCLGVASIHLDAVDIEKWKMTNLSFGESVGIYSTIIFLILLARAAFVFPLSALSNFFNRHIESQHLITFKHQIVIWWAGLMREAVSIALAFKQFTYSGVTMDPINATMVTNTIIVVLFSTVVSDLLGIFSNTCSLLPIRSCFFIFFLFFF 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 225996 228842 + Conep06aG0003700.1 Cone6ag0037 438921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0037 261 Gene3D - 24 83 - -
Cone6ag0037 261 PANTHER SODIUM/HYDROGEN EXCHANGER 136 234 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0037 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0037 Cone-Chr6:225996 Cone7ag0181 Cone-Chr7:761678 6.42E-47 dispersed
Cone6ag0037 Cone-Chr6:225996 Cone9ag0040 Cone-Chr9:173759 4.47E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g594 . . Bda07g00386 . . . . . . . Cma01g01101 . Car01g00973 . Sed09g1199 . Cpe02g00800 Bhi09g01719 Tan01g3145 Cmetu01g2066 . Hepe01g1235 Mch11g1230 . . . . . . . . Cone6ag0037 Cone9ag0040 . . Lsi02g01866 Csa07g00987 . . . . . . Bpe11g00564 . . Bma14g00316 . Cmo01g01147 . . . . . . . . . . . . . . Cla09g02040 Cam09g2129 Cec09g2194 . . . . . . Chy01g01074 Cme01g00977
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000259 5 3 4 6 6 5 5 5 4 4 4 4 5 5 5 5 5 9 6 4 4 5 4 6 5 6 6 10 5 5 155